Disease: Lupus Erythematosus, Systemic
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1801274
FCGR2A
0.597 0.800 1 161509955 missense variant A/C;G snv 4.0E-06; 0.48 46
rs10889677
IL23R
0.627 0.720 1 67259437 3 prime UTR variant C/A snv 0.27 40
rs352140
TLR9
0.630 0.680 3 52222681 synonymous variant C/A;G;T snv 2.0E-05; 0.49 42
rs121917864
TLR2
0.645 0.520 4 153704936 missense variant C/T snv 8.8E-05 9.8E-05 31
rs5743836
TLR9
0.658 0.440 3 52226766 intron variant A/G snv 0.20 31
rs1127354
ITPA
0.667 0.400 20 3213196 missense variant C/A;G snv 7.5E-02 26
rs34536443
TYK2
0.667 0.400 19 10352442 missense variant G/C snv 2.7E-02 2.8E-02 25
rs1990760
IFIH1
0.672 0.480 2 162267541 missense variant C/T snv 0.50 0.45 33
rs653178
ATXN2
0.672 0.600 12 111569952 intron variant C/T snv 0.67 41
rs7517847
IL23R ; C1orf141
0.689 0.600 1 67215986 intron variant T/G snv 0.37 19
rs2187668
LOC107986589 ; HLA-DQA2 ; HLA-DQA1
0.701 0.480 6 32638107 intron variant C/T snv 3.3E-03 20
rs4246905
TNFSF15
0.716 0.400 9 114790969 missense variant T/A;C snv 0.76 16
rs4676410
GPR35
0.716 0.240 2 240624322 intron variant G/A snv 0.26 17
rs2111485 0.724 0.280 2 162254026 regulatory region variant A/G snv 0.46 17
rs352139
TLR9
0.732 0.320 3 52224356 intron variant T/C snv 0.51 0.54 18
rs4728142 0.732 0.320 7 128933913 upstream gene variant G/A snv 0.38 18
rs7848647
TNFSF15
0.732 0.320 9 114806766 upstream gene variant T/C snv 0.74 13
rs3810936
TNFSF15
0.742 0.320 9 114790605 synonymous variant T/C snv 0.71 0.75 12
rs6920220 0.742 0.440 6 137685367 intron variant G/A snv 0.16 14
rs12720356
TYK2
0.752 0.360 19 10359299 missense variant A/C;G snv 6.1E-02; 4.0E-06 12
rs6478109
TNFSF15
0.752 0.320 9 114806486 upstream gene variant A/G snv 0.74 12
rs721917
SFTPD
0.752 0.360 10 79946568 missense variant A/G snv 0.47 0.42 14
rs6478108
TNFSF15
0.763 0.200 9 114796423 intron variant C/T snv 0.73 10
rs878859113
CD24
0.763 0.360 6 106971734 missense variant G/A snv 0.35 11
rs2305764
MYO9B
0.776 0.360 19 17203024 non coding transcript exon variant G/A snv 0.52 0.50 10