DisGeNET - a database of gene-disease associations

List of shared variants

Psoriasis, C0033860

Disease: Lupus Erythematosus, Systemic

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs17266594	BANK1	0.807	0.280	4	101829765	intron variant	T/C	snv	0.25	0.27	7
rs10516487	BANK1	0.752	0.360	4	101829919	missense variant	G/A;T	snv	0.26; 8.0E-06		11
rs3733197	BANK1	0.742	0.320	4	101918130	missense variant	G/A	snv	0.31	0.30	13
rs2075184		0.724	0.240	2	102464132	intergenic variant	T/C	snv		0.78	14
rs34536443	TYK2	0.667	0.400	19	10352442	missense variant	G/C	snv	2.7E-02	2.8E-02	25
rs35018800	TYK2	0.790	0.160	19	10354167	missense variant	G/A	snv	4.6E-03	4.9E-03	9
rs12720356	TYK2	0.752	0.360	19	10359299	missense variant	A/C;G	snv	6.1E-02; 4.0E-06		12
rs280519	TYK2	0.752	0.320	19	10362257	splice region variant	A/C;G	snv	0.50		10
rs62131887		0.724	0.240	19	10476920	intergenic variant	C/T	snv		0.37	14
rs11839053		0.724	0.240	13	106410694	intergenic variant	T/C	snv		7.0E-02	14
rs33980500	TRAF3IP2-AS1 ; TRAF3IP2	0.742	0.200	6	111592059	missense variant	C/T	snv	8.6E-02	9.7E-02	14
rs6679677	PHTF1	0.653	0.320	1	113761186	upstream gene variant	C/A	snv		6.7E-02	26
rs2476601	AP4B1-AS1 ; PTPN22	0.498	0.800	1	113834946	missense variant	A/G	snv	0.93	0.93	121
rs1217414	PTPN22 ; AP4B1-AS1	0.882	0.120	1	113870045	non coding transcript exon variant	G/A	snv		0.36	3
rs4246905	TNFSF15	0.716	0.400	9	114790969	missense variant	T/A;C	snv	0.76		16
rs6478108	TNFSF15	0.763	0.200	9	114796423	intron variant	C/T	snv		0.73	10
rs6478109	TNFSF15	0.752	0.320	9	114806486	upstream gene variant	A/G	snv		0.74	12
rs7848647	TNFSF15	0.732	0.320	9	114806766	upstream gene variant	T/C	snv		0.74	13
rs4986790	TLR4	0.438	0.800	9	117713024	missense variant	A/G;T	snv	6.1E-02; 4.0E-06		223
rs1801131	MTHFR	0.535	0.840	1	11794419	missense variant	T/G	snv	0.29	0.26	93
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs1801133	MTHFR	0.472	0.880	1	11796321	missense variant	G/A	snv	0.31	0.27	174
rs1061622	TNFRSF1B	0.633	0.760	1	12192898	missense variant	T/G	snv	0.22	0.22	33
rs62324212	IL21-AS1	0.724	0.240	4	122639784	intron variant	C/A;G	snv			15
rs7042370	LURAP1L-AS1 ; LURAP1L	0.724	0.240	9	12785074	intron variant	T/C	snv		0.58	14