Disease: Lupus Erythematosus, Systemic
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs8016947 0.925 0.080 14 35363460 intron variant T/G snv 0.60 2
rs1217414
PTPN22 ; AP4B1-AS1
0.882 0.120 1 113870045 non coding transcript exon variant G/A snv 0.36 3
rs2066807
STAT2
0.925 0.080 12 56346898 missense variant C/G snv 4.9E-02 4.6E-02 4
rs2243188
LOC105372878 ; IL19
0.851 0.200 1 206841127 intron variant A/C;T snv 0.69 4
rs4112788 0.851 0.120 1 152578800 downstream gene variant A/G;T snv 4
rs4649203 0.851 0.160 1 24193430 intergenic variant G/A snv 0.61 4
rs4085613 0.827 0.160 1 152577542 downstream gene variant T/G snv 0.59 5
rs11117431 0.807 0.160 16 85981710 intron variant A/G snv 0.18 6
rs1267499
LOC101928354
0.807 0.160 6 14715651 intron variant T/A;C snv 6
rs17266594
BANK1
0.807 0.280 4 101829765 intron variant T/C snv 0.25 0.27 7
rs3024493
IL19 ; IL10
0.776 0.280 1 206770623 intron variant C/A;T snv 0.11 9
rs35018800
TYK2
0.790 0.160 19 10354167 missense variant G/A snv 4.6E-03 4.9E-03 9
rs2280714
TNPO3
0.752 0.440 7 128954671 3 prime UTR variant C/T snv 0.64 10
rs2294020
CCDC22
0.763 0.280 X 49246763 missense variant A/G;T snv 10
rs2431697 0.776 0.240 5 160452971 intron variant T/C snv 0.44 10
rs280519
TYK2
0.752 0.320 19 10362257 splice region variant A/C;G snv 0.50 10
rs6478108
TNFSF15
0.763 0.200 9 114796423 intron variant C/T snv 0.73 10
rs10036748
TNIP1
0.752 0.360 5 151078585 intron variant C/A;T snv 11
rs10516487
BANK1
0.752 0.360 4 101829919 missense variant G/A;T snv 0.26; 8.0E-06 11
rs12720356
TYK2
0.752 0.360 19 10359299 missense variant A/C;G snv 6.1E-02; 4.0E-06 12
rs1893592
UBASH3A
0.742 0.280 21 42434957 missense variant A/C;G snv 0.27; 8.0E-06 12
rs6478109
TNFSF15
0.752 0.320 9 114806486 upstream gene variant A/G snv 0.74 12
rs3733197
BANK1
0.742 0.320 4 101918130 missense variant G/A snv 0.31 0.30 13
rs3747517
IFIH1
0.732 0.360 2 162272314 missense variant T/C snv 0.68 0.68 13
rs7848647
TNFSF15
0.732 0.320 9 114806766 upstream gene variant T/C snv 0.74 13