Disease: Metabolic Syndrome X
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs13266634
SLC30A8 ; LOC105375716
0.724 0.480 8 117172544 missense variant C/A;T snv 0.29 23
rs58542926
TM6SF2
0.630 0.440 19 19268740 missense variant C/T snv 6.5E-02 5.8E-02 42
rs263
LPL
1.000 0.040 8 19955301 intron variant C/T snv 0.23 4
rs268
LPL
0.637 0.480 8 19956018 missense variant A/G snv 1.3E-02 1.3E-02 41
rs271
LPL
1.000 0.040 8 19956191 intron variant G/A;T snv 4
rs301
LPL
0.925 0.160 8 19959423 intron variant T/C snv 0.24 0.26 7
rs328
LPL
0.732 0.440 8 19962213 stop gained C/G snv 9.2E-02 9.0E-02 19
rs2197089 0.925 0.080 8 19968862 downstream gene variant G/A snv 0.61 5
rs10096633 1.000 0.040 8 19973410 regulatory region variant C/T snv 0.22 8
rs10503669 0.925 0.080 8 19990179 intergenic variant C/A snv 8.4E-02 8
rs17410962 1.000 0.040 8 19990569 intergenic variant G/A snv 0.15 7
rs17489282 1.000 0.040 8 19995007 regulatory region variant C/T snv 0.25 5
rs2083637 0.925 0.080 8 20007664 intergenic variant A/G snv 0.25 6
rs765547 0.827 0.160 8 20008763 intergenic variant G/A;C;T snv 18
rs11986942 1.000 0.040 8 20009934 intergenic variant C/G;T snv 5
rs1919484 1.000 0.040 8 20012165 intergenic variant G/A snv 0.23 5
rs7461115 1.000 0.040 8 20014029 intergenic variant C/A;G snv 0.37 4
rs7013777 1.000 0.040 8 20020845 intergenic variant T/C;G snv 4
rs673548
APOB
0.925 0.120 2 21014672 intron variant G/A;T snv 14
rs1333049
CDKN2B-AS1
0.614 0.520 9 22125504 intron variant G/C snv 0.41 60
rs2943641 0.763 0.160 2 226229029 intergenic variant T/C snv 0.67 18
rs1260326
GCKR
0.645 0.600 2 27508073 missense variant T/C;G snv 0.63; 4.0E-06 0.68 81
rs780094
GCKR
0.658 0.400 2 27518370 intron variant T/C snv 0.67 62
rs780093
GCKR
0.763 0.240 2 27519736 intron variant T/C snv 0.68 30
rs780092
GCKR
0.827 0.160 2 27520287 intron variant A/G snv 0.18 10