Disease: Malignant tumor of colon
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs73110464
KRT8
0.708 0.280 12 52918828 intron variant C/T snv 0.12 17
rs7679673 0.677 0.440 4 105140377 intron variant C/A snv 0.50 28
rs7725218
TERT
0.708 0.280 5 1282299 intron variant G/A snv 0.38 17
rs7758229
SLC22A3
0.732 0.120 6 160419220 intron variant G/A;T snv 16
rs7903146
TCF7L2
0.554 0.680 10 112998590 intron variant C/G;T snv 93
rs9651118
MTHFR
0.683 0.480 1 11802157 intron variant T/C snv 0.18 20
rs115707823 0.701 0.320 6 30374976 intergenic variant G/A snv 19
rs147527678 0.708 0.280 6 32699696 intergenic variant G/A;C snv 17
rs147680653 0.708 0.280 6 29785031 intergenic variant A/G snv 17
rs75316749
LOC107986051
0.701 0.280 3 169043635 intergenic variant A/G snv 4.2E-02 18
rs7931342 0.689 0.360 11 69227030 intergenic variant T/G snv 0.58 20
rs1862626 0.708 0.280 5 56737113 regulatory region variant G/T snv 0.68 17
rs11571833
BRCA2
0.608 0.360 13 32398489 stop gained A/T snv 6.6E-03 6.0E-03 43
rs13181
KLC3 ; ERCC2
0.487 0.760 19 45351661 stop gained T/A;G snv 4.0E-06; 0.32 134
rs1042522
TP53
0.426 0.800 17 7676154 missense variant G/C;T snv 0.67 242
rs1042636
CASR
0.672 0.360 3 122284922 missense variant A/G snv 0.15 9.0E-02 23
rs1045485
CASP8
0.637 0.480 2 201284866 missense variant G/A;C;T snv 4.0E-06; 9.0E-02 34
rs1052133
OGG1 ; CAMK1
0.476 0.800 3 9757089 missense variant C/G snv 0.27 0.22 147
rs1130409
APEX1
0.555 0.720 14 20456995 missense variant T/A;C;G snv 4.0E-06; 4.0E-06; 0.42 72
rs1136410
PARP1
0.559 0.760 1 226367601 missense variant A/G snv 0.21 0.15 70
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs12917
MGMT ; LOC105378560
0.605 0.480 10 129708019 missense variant C/T snv 0.14 0.14 45
rs138213197
HOXB13
0.701 0.240 17 48728343 missense variant C/T snv 1.8E-03 1.6E-03 24
rs17879961
CHEK2
0.597 0.480 22 28725099 missense variant A/C;G snv 4.1E-03 53
rs1799782
XRCC1
0.474 0.800 19 43553422 missense variant G/A snv 9.5E-02 7.0E-02 151