DisGeNET - a database of gene-disease associations

List of shared variants

Prostate carcinoma, C0600139

Disease: Malignant tumor of colon

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1011970	CDKN2B-AS1	0.677	0.320	9	22062135	intron variant	G/T	snv		0.23	22
rs17879961	CHEK2	0.597	0.480	22	28725099	missense variant	A/C;G	snv	4.1E-03		53
rs231775	CTLA4	0.504	0.720	2	203867991	missense variant	A/G;T	snv	0.42; 4.0E-06		115
rs2585428	CYP24A1	0.763	0.200	20	54170358	intron variant	C/T	snv		0.46	11
rs6022999	CYP24A1	0.790	0.160	20	54171474	intron variant	A/G	snv		0.36	9
rs3742330	DICER1	0.662	0.640	14	95087025	3 prime UTR variant	A/G	snv		8.7E-02	24
rs2077647	ESR1	0.732	0.320	6	151807942	synonymous variant	T/A;C	snv	8.1E-06; 0.46		16
rs2228480	ESR1	0.724	0.360	6	152098960	synonymous variant	G/A	snv	0.19	0.18	16
rs2234693	ESR1	0.555	0.680	6	151842200	intron variant	T/C	snv		0.47	77
rs1801394	FASTKD3 ; MTRR	0.531	0.840	5	7870860	missense variant	A/G	snv	0.47	0.45	101
rs11200014	FGFR2	0.695	0.280	10	121575416	intron variant	G/A;T	snv		0.34	19
rs56084662	FRY	0.701	0.280	13	32295727	3 prime UTR variant	G/A	snv		3.5E-03	18
rs56404467	FRY	0.708	0.280	13	32265853	intron variant	G/A	snv		1.3E-02	17
rs1057941	GBAP1	0.701	0.280	1	155216951	non coding transcript exon variant	G/A;T	snv	0.46		18
rs115392158	HLA-B	0.708	0.280	6	31347004	intron variant	A/G	snv			17
rs12601991	HNF1B	0.708	0.280	17	37741642	intron variant	T/A;G	snv			17
rs138213197	HOXB13	0.701	0.240	17	48728343	missense variant	C/T	snv	1.8E-03	1.6E-03	24
rs2854746	IGFBP3	0.752	0.200	7	45921046	missense variant	G/A;C;T	snv	0.38		14
rs1801278	IRS1	0.637	0.560	2	226795828	missense variant	C/G;T	snv	4.0E-06; 5.2E-02		38
rs11119608	KCNH1	0.708	0.280	1	210816167	intron variant	T/G	snv		0.21	17
rs13181	KLC3 ; ERCC2	0.487	0.760	19	45351661	stop gained	T/A;G	snv	4.0E-06; 0.32		134
rs73110464	KRT8	0.708	0.280	12	52918828	intron variant	C/T	snv		0.12	17
rs7799039	LOC105375494	0.649	0.560	7	128238730	upstream gene variant	G/A;C	snv			33
rs75316749	LOC107986051	0.701	0.280	3	169043635	intergenic variant	A/G	snv		4.2E-02	18
rs2279744	MDM2	0.605	0.640	12	68808800	intron variant	T/G	snv		0.31	48