DisGeNET - a database of gene-disease associations

List of associated variants

Human immunodeficiency virus (HIV) II infection category B1, C3854222

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs121913377	BRAF	0.354	0.840	7	140753335	missense variant	CA/AT;TT	mnv			480
rs1805192	PPARG	0.510	0.840	3	12379739	missense variant	C/G	snv			121
rs9939609	FTO	0.559	0.720	16	53786615	intron variant	T/A	snv		0.41	98
rs7903146	TCF7L2	0.554	0.680	10	112998590	intron variant	C/G;T	snv			93
rs12979860	IFNL4	0.547	0.520	19	39248147	intron variant	C/T	snv		0.39	84
rs8099917		0.581	0.600	19	39252525	upstream gene variant	T/G	snv		0.16	60
rs766914563	LOC112268426 ; CXCR4	0.732	0.320	2	136115082	synonymous variant	C/T	snv		7.0E-06	16
rs9264942	LOC112267902 ; HLA-B	0.763	0.400	6	31306603	intron variant	T/C	snv		0.34	15
rs10833	IL15	0.776	0.160	4	141733394	3 prime UTR variant	T/A;C	snv			10
rs3921	CXCL10 ; ART3	0.807	0.240	4	76021790	3 prime UTR variant	C/G	snv		0.61	8
rs10336	LOC101928809 ; CXCL9	0.851	0.240	4	76001835	3 prime UTR variant	A/G;T	snv			4
rs10892151	DSCAML1 ; LOC105369515	1.000		11	117661016	intron variant	C/T	snv		9.7E-02	3
rs11881222	IFNL3	0.925	0.080	19	39244283	intron variant	A/G	snv		0.30	3
rs4619915	CXCL11 ; ART3	0.882	0.120	4	76034048	3 prime UTR variant	A/G	snv		0.61	3
rs7248668		0.925	0.080	19	39253181	upstream gene variant	G/A	snv		0.16	3
rs1194919682	CXCR4 ; LOC112268426	0.925	0.040	2	136115158	missense variant	A/G	snv			2
rs1292288729	CYP2B6	1.000		19	41009375	missense variant	T/C	snv		7.4E-06	1
rs4657412	LMX1A ; LMX1A-AS2	1.000		1	165207796	intron variant	G/A	snv		0.79	1
rs756151230	ERVW-1 ; GATAD1	1.000		7	92470377	missense variant	G/C	snv			1
rs371074389	LOC112268426 ; CXCR4	0.732	0.320	2	136115226	synonymous variant	C/T	snv	4.0E-06	4.2E-05	16
rs1272938495	CXCR4 ; LOC112268426	1.000		2	136115225	missense variant	G/A	snv	4.0E-06	7.0E-06	1
rs781172058	CXCR4	0.732	0.320	2	136115340	synonymous variant	C/T	snv	4.0E-06		16
rs763059810	CXCR4	0.623	0.600	2	136115750	missense variant	T/C	snv	4.0E-06		41
rs749569169	CHN2 ; LOC107986700	1.000		7	29512676	missense variant	A/G	snv	4.0E-06		1
rs3745274	CYP2B6	0.672	0.480	19	41006936	missense variant	G/A;T	snv	4.0E-06; 0.27		30