DisGeNET - a database of gene-disease associations

List of associated variants

Human immunodeficiency virus (HIV) II infection category B1, C3854222

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs113488022	BRAF	0.351	0.840	7	140753336	missense variant	A/C;G;T	snv	4.0E-06		490
rs12252	IFITM3	0.695	0.240	11	320772	splice region variant	A/G	snv	0.13	0.13	23
rs762513613	FCGR2C	0.752	0.280	1	161591315	missense variant	A/G	snv	4.2E-06	7.4E-06	11
rs11881222	IFNL3	0.925	0.080	19	39244283	intron variant	A/G	snv		0.30	3
rs4619915	CXCL11 ; ART3	0.882	0.120	4	76034048	3 prime UTR variant	A/G	snv		0.61	3
rs1194919682	CXCR4 ; LOC112268426	0.925	0.040	2	136115158	missense variant	A/G	snv			2
rs1048412	ZNRD1	1.000		6	30064718	3 prime UTR variant	A/G	snv	0.15	0.17	1
rs1276738522	CD9 ; LOC105369625	1.000		12	6232664	start lost	A/G	snv	4.9E-06		1
rs749569169	CHN2 ; LOC107986700	1.000		7	29512676	missense variant	A/G	snv	4.0E-06		1
rs4986790	TLR4	0.438	0.800	9	117713024	missense variant	A/G;T	snv	6.1E-02; 4.0E-06		223
rs1045642	ABCB1	0.456	0.840	7	87509329	synonymous variant	A/G;T	snv	0.50		214
rs10336	LOC101928809 ; CXCL9	0.851	0.240	4	76001835	3 prime UTR variant	A/G;T	snv			4
rs1799972	OPRM1	0.827	0.080	6	154039561	missense variant	C/A;G;T	snv	4.1E-06; 1.7E-02		6
rs11045819	SLCO1B1	0.851	0.120	12	21176879	missense variant	C/A;T	snv	0.11; 4.0E-06		4
rs2910164	MIR3142HG ; MIR146A	0.447	0.880	5	160485411	mature miRNA variant	C/G	snv	0.71; 4.1E-06	0.70	193
rs1801282	PPARG	0.500	0.840	3	12351626	missense variant	C/G	snv	0.11	8.9E-02	131
rs1805192	PPARG	0.510	0.840	3	12379739	missense variant	C/G	snv			121
rs738409	PNPLA3	0.557	0.720	22	43928847	missense variant	C/G	snv	0.28	0.22	88
rs3921	CXCL10 ; ART3	0.807	0.240	4	76021790	3 prime UTR variant	C/G	snv		0.61	8
rs7903146	TCF7L2	0.554	0.680	10	112998590	intron variant	C/G;T	snv			93
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs12979860	IFNL4	0.547	0.520	19	39248147	intron variant	C/T	snv		0.39	84
rs58542926	TM6SF2	0.630	0.440	19	19268740	missense variant	C/T	snv	6.5E-02	5.8E-02	42
rs8177374	TIRAP	0.672	0.520	11	126292948	missense variant	C/T	snv	0.12	0.11	22
rs371074389	LOC112268426 ; CXCR4	0.732	0.320	2	136115226	synonymous variant	C/T	snv	4.0E-06	4.2E-05	16