PTGS2, prostaglandin-endoperoxide synthase 2, 5743

N. diseases: 1234; N. variants: 27
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0376358
Disease:
Malignant neoplasm of prostate
0.040 GeneticVariation BEFREE When all groups were pooled, we did not detect a significant association of rs20417 polymorphism with prostate cancer risk. 22782583 2012
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0600139
Disease:
Prostate carcinoma
0.040 GeneticVariation BEFREE In a hospital-based case/control study, 195 subjects with PCa and 250 healthy controls were investigated for the association of COX-2 -765 G>C (rs20417) and +8473 T>C (rs5275) promoter polymorphism with PCa susceptibility using the polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP) method. 22023987 2011
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0376358
Disease:
Malignant neoplasm of prostate
0.040 GeneticVariation BEFREE In a hospital-based case/control study, 195 subjects with PCa and 250 healthy controls were investigated for the association of COX-2 -765 G>C (rs20417) and +8473 T>C (rs5275) promoter polymorphism with PCa susceptibility using the polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP) method. 22023987 2011
dbSNP: rs5275
rs5275
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
CUI: C0006142
Disease:
Malignant neoplasm of breast
0.040 GeneticVariation BEFREE Crude odds ratios (ORs) with 95% confidence intervals (CIs) were used to assess the strength of association between each polymorphism and breast cancer risk under the codominant model, dominant model, and recessive model, respectively (nine studies with 6,968 cases and 9,126 controls for rs5275; three studies with 2,901 cases and 3,463 controls for rs20417; two studies with 5,551 cases and 6,208 controls for rs5277). 20033767 2010
dbSNP: rs5275
rs5275
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
CUI: C0678222
Disease:
Breast Carcinoma
0.040 GeneticVariation BEFREE Crude odds ratios (ORs) with 95% confidence intervals (CIs) were used to assess the strength of association between each polymorphism and breast cancer risk under the codominant model, dominant model, and recessive model, respectively (nine studies with 6,968 cases and 9,126 controls for rs5275; three studies with 2,901 cases and 3,463 controls for rs20417; two studies with 5,551 cases and 6,208 controls for rs5277). 20033767 2010
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0376358
Disease:
Malignant neoplasm of prostate
0.040 GeneticVariation BEFREE We found no evidence that rs20417</span> alters prostate cancer</span> risk (odds</span> ratio (OR(CC & GC v GG)=1.05, 95% confidence interval (CI)=0.91-1.20). 19488068 2009
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0600139
Disease:
Prostate carcinoma
0.040 GeneticVariation BEFREE We found no evidence that rs20417</span> alters prostate cancer</span> risk (odds</span> ratio (OR(CC & GC v GG)=1.05, 95% confidence interval (CI)=0.91-1.20). 19488068 2009
dbSNP: rs5275
rs5275
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
CUI: C0006142
Disease:
Malignant neoplasm of breast
0.040 GeneticVariation BEFREE The rs5275 polymorphism in the 3' untranslated region of the PTGS2 gene was associated with a decrease in breast cancer risk. 17214885 2007
dbSNP: rs5275
rs5275
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
CUI: C0678222
Disease:
Breast Carcinoma
0.040 GeneticVariation BEFREE The rs5275 polymorphism in the 3' untranslated region of the PTGS2 gene was associated with a decrease in breast cancer risk. 17214885 2007
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0948008
Disease:
Ischemic stroke
0.030 GeneticVariation BEFREE We investigated five variants (rs5788, rs1330344, rs3842788, rs20417, and rs689466) of two COX genes in order to explaining the association between these polymorphisms and we also investigated the association between these variants and ischemic stroke risk to determine whether gene-gene interaction between these genes increases the susceptibility of ischemic stroke or its subtypes. 31735164 2019
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C2239176
Disease:
Liver carcinoma
0.030 GeneticVariation BEFREE In the subgroup analyses stratified by ethnicity, the COX-2 -1195G/A, -765G/C, and +8473T/C were all associated with an increased HCC risk in Asian populations (rs689466 A vs. G: OR = 1.346, P = 0.001, 95% CI: 1.137-1.595, I<sup>2</sup> = 0.0%, P<sub>heterogeneity</sub> = 0.869; rs20417 CC vs. GG + GC: OR = 3.069, P = 0.013, 95% CI: 1.265-7.447; rs5275 CC vs. TT + TC: OR = 1.626, P = 0.020, 95% CI: 1.079-2.452, I<sup>2</sup> = 0.0%, P<sub>heterogeneity</sub> = 0.495). 29578159 2018
dbSNP: rs5275
rs5275
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
CUI: C2239176
Disease:
Liver carcinoma
0.030 GeneticVariation BEFREE In the subgroup analyses stratified by ethnicity, the COX-2 -1195G/A, -765G/C, and +8473T/C were all associated with an increased HCC risk in Asian populations (rs689466 A vs. G: OR = 1.346, P = 0.001, 95% CI: 1.137-1.595, I<sup>2</sup> = 0.0%, P<sub>heterogeneity</sub> = 0.869; rs20417 CC vs. GG + GC: OR = 3.069, P = 0.013, 95% CI: 1.265-7.447; rs5275 CC vs. TT + TC: OR = 1.626, P = 0.020, 95% CI: 1.079-2.452, I<sup>2</sup> = 0.0%, P<sub>heterogeneity</sub> = 0.495). 29578159 2018
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0948008
Disease:
Ischemic stroke
0.030 GeneticVariation BEFREE The high-risk interactive genotypes of rs20417, rs1371097 and rs2317676 were independently associated with primary adverse outcome of RIS, MI, and death after acute IS. 28344655 2017
dbSNP: rs2745557
rs2745557
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0376358
Disease:
Malignant neoplasm of prostate
0.030 GeneticVariation BEFREE Also, the coexistence of COX-2 (rs2745557) and obesity, smoking, or diabetes may lead to the development of PCa or BPH. 26920155 2016
dbSNP: rs2745557
rs2745557
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0600139
Disease:
Prostate carcinoma
0.030 GeneticVariation BEFREE Also, the coexistence of COX-2 (rs2745557) and obesity, smoking, or diabetes may lead to the development of PCa or BPH. 26920155 2016
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0038454
Disease:
Cerebrovascular accident
0.030 GeneticVariation BEFREE In the Brazilian cohort, rs20417 polymorphism was associated with both stroke (P = 5 × 10(-6)) and decreased PGE2 levels (P = 4 × 10(-5)); similarly, Chagas was associated with stroke (P = 4 × 10(-3)) and decreased PGE2 levels (P = 7 × 10(-3)). 25957909 2015
dbSNP: rs5275
rs5275
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
CUI: C0030193
Disease:
Pain
0.030 GeneticVariation BEFREE Finally, we identified genetic variants in COX-2 (haplotype composed of rs2383515 G, rs5277 G, rs5275 T, and rs2206593 A) associated with post-treatment pain after endodontic treatment (P = .025). 26081267 2015
dbSNP: rs5277
rs5277
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0006142
Disease:
Malignant neoplasm of breast
0.030 GeneticVariation BEFREE In contrast, COX-2 rs5275, rs689466, rs2206593 and rs5277 polymorphisms might be not associated with the risk of breast cancer. 25433948 2015
dbSNP: rs5277
rs5277
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0678222
Disease:
Breast Carcinoma
0.030 GeneticVariation BEFREE In contrast, COX-2 rs5275, rs689466, rs2206593 and rs5277 polymorphisms might be not associated with the risk of breast cancer. 25433948 2015
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C1956346
Disease:
Coronary Artery Disease
0.030 GeneticVariation BEFREE These results suggest that COX-2 rs20417 polymorphism may contribute to CAD development, especially in Asians. 24513487 2014
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C1956346
Disease:
Coronary Artery Disease
0.030 GeneticVariation BEFREE Among patients with previous coronary artery disease (CAD), rs20417 carriers had a stronger protective effect on risk of major adverse events when compared with individuals without previous CAD (interaction P-value: 0.015). 24796340 2014
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C2239176
Disease:
Liver carcinoma
0.030 GeneticVariation BEFREE Our results showed that the Cox-2 rs20417 (-765 G/C) polymorphism was not associated with HCC risk in the studied genetic contrast modes (C vs. G, GC vs. GG, and CC + GC vs. GG). 25400773 2014
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0007222
Disease:
Cardiovascular Diseases
0.030 GeneticVariation BEFREE Carriage of the rs20417</span> minor allele was associated with a decreased risk of major CVD outcomes (OR = 0.78, 95% CI: 0.70-0.87; P = 1.2 × 10(-5)). 24796340 2014
dbSNP: rs5275
rs5275
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
CUI: C2239176
Disease:
Liver carcinoma
0.030 GeneticVariation BEFREE Similarly, no significant association of the Cox-2 rs5275 (+ 8473 T/C) polymorphism and HCC risk was found under any of the studied contrasts (C vs. T, TC vs. TT, CC vs. TT, CC + TC vs. TT, CC vs. TC + TT). 25400773 2014
dbSNP: rs20417
rs20417
Entrez Id: 5743;103752588
Gene Symbol: PTGS2;PACERR
PTGS2;PACERR
CUI: C0038454
Disease:
Cerebrovascular accident
0.030 GeneticVariation BEFREE Therefore, the present study was taken up to investigate the role of -765G/C polymorphism (rs20417) in the cyclooxygenase-2 (COX-2) gene with AR in stroke patients. 22763923 2013