SLC6A4, solute carrier family 6 member 4, 6532

N. diseases: 440; N. variants: 28
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0028043
Disease:
Nicotine Dependence
0.010 GeneticVariation BEFREE Considering biological functions of the three genes, we examined interactive effects of variants in the three genes, which revealed significant interactions among rs1062613 and rs10160548 in HTR3A, rs1176744 in HTR3B, and 5-HTTLPR and rs1042173 in SLC6A4 in affecting ND in the three samples. 23290502 2013
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0001973
Disease:
Alcoholic Intoxication, Chronic
0.010 GeneticVariation BEFREE Subsequent analysis of these two interaction models revealed an OR of 2.71 and 2.80, respectively, for AD (P < 0.001) in carriers of genotype combinations 5'-HTTLPR:LL/LS(SLC6A4)-rs1042173:TT/TG(SLC6A4)-rs1176744:AC(HTR3B)-rs3782025:AG(HTR3B) and 5'-HTTLPR:LL/LS(SLC6A4)-rs10160548:GT/TT(HTR3A)-rs1176744:AC(HTR3B)-rs3782025:AG(HTR3B). 23757001 2013
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0011570
Disease:
Mental Depression
0.010 GeneticVariation BEFREE Cognitive status, age, and depression were directly associated with successful aging; variance in rs25532 or rs1042173, resilience, and pain were indirectly associated with successful aging through depression. 25818147 2015
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0522254
Disease:
Analgesic Overuse Headache
0.010 GeneticVariation BEFREE Although a minor contribution of SLC6A4 variants in the genetic liability of MOH cannot be excluded, haplotype-based analysis of STin2 VNTR and rs1042173T>G polymorphisms allowed to identify a subgroup of MOH patients with a higher number of monthly headache and, possibly, with a more severe disease. 21585624 2012
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0036341
Disease:
Schizophrenia
0.010 GeneticVariation BEFREE In Caucasians, a GG genotype of rs1042173 may be a risk factor for schizophrenia (<i>P<sub>z</sub></i> =0.006, OR =1.299, 95% CI =1.079-1.565). 30643413 2019
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0438696
Disease:
Suicidal
0.010 GeneticVariation BEFREE Likewise, CT exposed carriers of the major rs3813034-rs1042173 ATAT diplotype had an increased risk of suicidal behavior relative to the ATCG/CGCG diplotype carriers (0.40 vs 0.31). 23558235 2013
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0003862
Disease:
Arthralgia
0.010 GeneticVariation BEFREE In 5HTT, the rs1042173 was associated with painful TMD (arthralgia and myofascial pain) (OR<sub>c</sub>  = 1.97; CI 95%: 1.02-3.77; P = 0.04). 30811655 2019
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C2937365
Disease:
Recurrent aphthous ulcer
0.010 GeneticVariation BEFREE Totally, 239 subjects were enrolled in this case-control study: 86 patients with RAS and 153 healthy individuals were genotyped for serotonin transporter length polymorphic region (5-HTTLPR) polymorphism, variable number tandem repeat (STin2) and single nucleotide polymorphisms (rs25531, rs3813034, rs1042173) in the SLC6A4 gene by polymerase chain reaction with/without restriction analysis. 31846848 2020
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0553642
Disease:
Soft tissue rheumatism
0.010 GeneticVariation BEFREE In 5HTT, the rs1042173 was associated with painful TMD (arthralgia and myofascial pain) (OR<sub>c</sub>  = 1.97; CI 95%: 1.02-3.77; P = 0.04). 30811655 2019
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0344315
Disease:
Depressed mood
0.010 GeneticVariation BEFREE Cognitive status, age, and depression were directly associated with successful aging; variance in rs25532 or rs1042173, resilience, and pain were indirectly associated with successful aging through depression. 25818147 2015
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0018681
Disease:
Headache
0.010 GeneticVariation BEFREE Although a minor contribution of SLC6A4 variants in the genetic liability of MOH cannot be excluded, haplotype-based analysis of STin2 VNTR and rs1042173T>G polymorphisms allowed to identify a subgroup of MOH patients with a higher number of monthly headache and, possibly, with a more severe disease. 21585624 2012
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0039494
Disease:
Temporomandibular Joint Disorders
0.010 GeneticVariation BEFREE In 5HTT, the rs1042173 was associated with painful TMD (arthralgia and myofascial pain) (OR<sub>c</sub>  = 1.97; CI 95%: 1.02-3.77; P = 0.04). 30811655 2019
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0011581
Disease:
Depressive disorder
0.010 GeneticVariation BEFREE Cognitive status, age, and depression were directly associated with successful aging; variance in rs25532 or rs1042173, resilience, and pain were indirectly associated with successful aging through depression. 25818147 2015
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0030193
Disease:
Pain
0.010 GeneticVariation BEFREE Cognitive status, age, and depression were directly associated with successful aging; variance in rs25532 or rs1042173, resilience, and pain were indirectly associated with successful aging through depression. 25818147 2015
dbSNP: rs11872020
rs11872020
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C1261502
Disease:
Finding of Mean Corpuscular Hemoglobin
0.700 GeneticVariation GWASCAT Leveraging Polygenic Functional Enrichment to Improve GWAS Power. 30595370 2019
dbSNP: rs12449783
rs12449783
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0266929
Disease:
Chronic Periodontitis
0.010 GeneticVariation BEFREE <b>Conclusion:</b> Chronic periodontitis is associated with the <i>5-HTT</i> gene rs6354 polymorphism, as well as rs6354/rs12449783 interaction. 31428137 2019
dbSNP: rs140700
rs140700
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0036341
Disease:
Schizophrenia
0.020 GeneticVariation BEFREE The rs140700G/A allele of SLC6A4 is strongly associated with SZ susceptibility and symptom expression in the Chinese-Han population. 23583772 2013
dbSNP: rs140700
rs140700
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0036341
Disease:
Schizophrenia
0.020 GeneticVariation BEFREE No association was found between rs140700 and the risk for schizophrenia. 30643413 2019
dbSNP: rs140700
rs140700
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C1263846
Disease:
Attention deficit hyperactivity disorder
0.010 GeneticVariation BEFREE We found an association between ADHD and rs140700 [odds ratio (OR ) = 0.67; P = 0.01] and the short (S) allele of the 5-HTTLPR (OR = 1.19; P = 0.06) in the Norwegian sample. 20113357 2010
dbSNP: rs140701
rs140701
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0338656
Disease:
Impaired cognition
0.010 GeneticVariation BEFREE The analysis of the 3 markers rs3813034, rs140701 and rs4795541 spanning the SLC6A4 locus was made in 541 consecutive patients clinically diagnosed as having VaD (n = 372) or no cognitive impairment (n = 169) attending a geriatric ward. 20502016 2010
dbSNP: rs140701
rs140701
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0678222
Disease:
Breast Carcinoma
0.010 GeneticVariation BEFREE Furthermore, SNPs of the genes that contribute to alcohol behavior, DRD3 (rs167770), DRD2 (rs10891556), and SLC6A4 (rs140701), were also associated with an increased risk of breast cancer. 20180013 2010
dbSNP: rs140701
rs140701
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0011269
Disease:
Dementia, Vascular
0.010 GeneticVariation BEFREE The analysis of the 3 markers rs3813034, rs140701 and rs4795541 spanning the SLC6A4 locus was made in 541 consecutive patients clinically diagnosed as having VaD (n = 372) or no cognitive impairment (n = 169) attending a geriatric ward. 20502016 2010
dbSNP: rs140701
rs140701
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0006142
Disease:
Malignant neoplasm of breast
0.010 GeneticVariation BEFREE Furthermore, SNPs of the genes that contribute to alcohol behavior, DRD3 (rs167770), DRD2 (rs10891556), and SLC6A4 (rs140701), were also associated with an increased risk of breast cancer. 20180013 2010
dbSNP: rs140701
rs140701
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0085159
Disease:
Seasonal Affective Disorder
0.010 GeneticVariation BEFREE SLC6A4 provided strong and consistent evidence of association with the PD and PD+SAD groups, with the most significant association in both groups being at rs140701 (chi(2)=10.72, P=0.001 with PD and chi(2)=8.59, P=0.003 in the PD+SAD group). 18663369 2010
dbSNP: rs140701
rs140701
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0036341
Disease:
Schizophrenia
0.010 GeneticVariation BEFREE Further haplotype-based analyses revealed that a two-SNP haplotype, rs2054847-rs140701 (TG) in gene SLC6A4, was significantly associated with SZ (P-value = 1.63×10(-4) and corrected P-value = 0.002799). 26408209 2015