SLC6A4, solute carrier family 6 member 4, 6532

N. diseases: 440; N. variants: 28
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs11872020
rs11872020
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C1261502
Disease:
Finding of Mean Corpuscular Hemoglobin
0.700 GeneticVariation GWASCAT Leveraging Polygenic Functional Enrichment to Improve GWAS Power. 30595370 2019
dbSNP: rs2020942
rs2020942
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C1305855
Disease:
Body mass index
0.700 GeneticVariation GWASCAT Leveraging Polygenic Functional Enrichment to Improve GWAS Power. 30595370 2019
dbSNP: rs28914832
rs28914832
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C4016373
Disease:
OBSESSIVE-COMPULSIVE DISORDER, SUSCEPTIBILITY TO
C 0.700 SusceptibilityMutation CLINVAR
dbSNP: rs56124265
rs56124265
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0005890
Disease:
Body Height
T 0.700 GeneticVariation GWASCAT Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits. 28552196 2017
dbSNP: rs7212502
rs7212502
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0392885
Disease:
High density lipoprotein measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs7212502
rs7212502
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0202236
Disease:
Triglycerides measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs7212502
rs7212502
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0428472
Disease:
Serum HDL cholesterol measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs140700
rs140700
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0036341
Disease:
Schizophrenia
0.020 GeneticVariation BEFREE The rs140700G/A allele of SLC6A4 is strongly associated with SZ susceptibility and symptom expression in the Chinese-Han population. 23583772 2013
dbSNP: rs140700
rs140700
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0036341
Disease:
Schizophrenia
0.020 GeneticVariation BEFREE No association was found between rs140700 and the risk for schizophrenia. 30643413 2019
dbSNP: rs16965628
rs16965628
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0028768
Disease:
Obsessive-Compulsive Disorder
0.020 GeneticVariation BEFREE There was no association between rs25532 or rs16965628 and OCD. 29102815 2018
dbSNP: rs16965628
rs16965628
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0028768
Disease:
Obsessive-Compulsive Disorder
0.020 GeneticVariation BEFREE On the other hand, combined genotypes of SLC6A4 rs16965628 GG+GC were found to be risk fac</span>tors for OCD development (p=0.02, OR=3.464; 95% CI 1.214-9.883) in logistic regression analysis adjusted for age and gender. 25751280 2015
dbSNP: rs28914832
rs28914832
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0028768
Disease:
Obsessive-Compulsive Disorder
0.020 GeneticVariation BEFREE Thus, the cumulative count of SERT I425V becomes 1.57% in OCD/TD spectrum conditions versus 0.15% in controls, with a recalculated, family-adjusted significance of χ(2) = 15.03 (P < 0.0001; OR, 9.0; total worldwide genotyped, 2914). 23630162 2013
dbSNP: rs28914832
rs28914832
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0028768
Disease:
Obsessive-Compulsive Disorder
0.020 GeneticVariation BEFREE Similarly, three individuals (two with OCD/OCPD) carried the rare I425V SLC6A4 variant, but none of them passed it on to their six OCD-affected offspring, suggesting that it is unlikely to be solely responsible for the 'OCD plus syndrome', as reported by Ozaki et al. 19806148 2011
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0028043
Disease:
Nicotine Dependence
0.010 GeneticVariation BEFREE Considering biological functions of the three genes, we examined interactive effects of variants in the three genes, which revealed significant interactions among rs1062613 and rs10160548 in HTR3A, rs1176744 in HTR3B, and 5-HTTLPR and rs1042173 in SLC6A4 in affecting ND in the three samples. 23290502 2013
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0001973
Disease:
Alcoholic Intoxication, Chronic
0.010 GeneticVariation BEFREE Subsequent analysis of these two interaction models revealed an OR of 2.71 and 2.80, respectively, for AD (P < 0.001) in carriers of genotype combinations 5'-HTTLPR:LL/LS(SLC6A4)-rs1042173:TT/TG(SLC6A4)-rs1176744:AC(HTR3B)-rs3782025:AG(HTR3B) and 5'-HTTLPR:LL/LS(SLC6A4)-rs10160548:GT/TT(HTR3A)-rs1176744:AC(HTR3B)-rs3782025:AG(HTR3B). 23757001 2013
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0011570
Disease:
Mental Depression
0.010 GeneticVariation BEFREE Cognitive status, age, and depression were directly associated with successful aging; variance in rs25532 or rs1042173, resilience, and pain were indirectly associated with successful aging through depression. 25818147 2015
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0522254
Disease:
Analgesic Overuse Headache
0.010 GeneticVariation BEFREE Although a minor contribution of SLC6A4 variants in the genetic liability of MOH cannot be excluded, haplotype-based analysis of STin2 VNTR and rs1042173T>G polymorphisms allowed to identify a subgroup of MOH patients with a higher number of monthly headache and, possibly, with a more severe disease. 21585624 2012
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0036341
Disease:
Schizophrenia
0.010 GeneticVariation BEFREE In Caucasians, a GG genotype of rs1042173 may be a risk factor for schizophrenia (<i>P<sub>z</sub></i> =0.006, OR =1.299, 95% CI =1.079-1.565). 30643413 2019
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0438696
Disease:
Suicidal
0.010 GeneticVariation BEFREE Likewise, CT exposed carriers of the major rs3813034-rs1042173 ATAT diplotype had an increased risk of suicidal behavior relative to the ATCG/CGCG diplotype carriers (0.40 vs 0.31). 23558235 2013
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0003862
Disease:
Arthralgia
0.010 GeneticVariation BEFREE In 5HTT, the rs1042173 was associated with painful TMD (arthralgia and myofascial pain) (OR<sub>c</sub>  = 1.97; CI 95%: 1.02-3.77; P = 0.04). 30811655 2019
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C2937365
Disease:
Recurrent aphthous ulcer
0.010 GeneticVariation BEFREE Totally, 239 subjects were enrolled in this case-control study: 86 patients with RAS and 153 healthy individuals were genotyped for serotonin transporter length polymorphic region (5-HTTLPR) polymorphism, variable number tandem repeat (STin2) and single nucleotide polymorphisms (rs25531, rs3813034, rs1042173) in the SLC6A4 gene by polymerase chain reaction with/without restriction analysis. 31846848 2020
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0553642
Disease:
Soft tissue rheumatism
0.010 GeneticVariation BEFREE In 5HTT, the rs1042173 was associated with painful TMD (arthralgia and myofascial pain) (OR<sub>c</sub>  = 1.97; CI 95%: 1.02-3.77; P = 0.04). 30811655 2019
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0344315
Disease:
Depressed mood
0.010 GeneticVariation BEFREE Cognitive status, age, and depression were directly associated with successful aging; variance in rs25532 or rs1042173, resilience, and pain were indirectly associated with successful aging through depression. 25818147 2015
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0018681
Disease:
Headache
0.010 GeneticVariation BEFREE Although a minor contribution of SLC6A4 variants in the genetic liability of MOH cannot be excluded, haplotype-based analysis of STin2 VNTR and rs1042173T>G polymorphisms allowed to identify a subgroup of MOH patients with a higher number of monthly headache and, possibly, with a more severe disease. 21585624 2012
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0039494
Disease:
Temporomandibular Joint Disorders
0.010 GeneticVariation BEFREE In 5HTT, the rs1042173 was associated with painful TMD (arthralgia and myofascial pain) (OR<sub>c</sub>  = 1.97; CI 95%: 1.02-3.77; P = 0.04). 30811655 2019