SLC6A4, solute carrier family 6 member 4, 6532

N. diseases: 440; N. variants: 28
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs28914832
rs28914832
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C4016373
Disease:
OBSESSIVE-COMPULSIVE DISORDER, SUSCEPTIBILITY TO
C 0.700 SusceptibilityMutation CLINVAR
dbSNP: rs774676466
rs774676466
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C4016375
Disease:
SEROTONIN TRANSPORTER ACTIVITY, INCREASED/DECREASED
A 0.700 CausalMutation CLINVAR
dbSNP: rs6354
rs6354
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0266929
Disease:
Chronic Periodontitis
0.010 GeneticVariation BEFREE <b>Conclusion:</b> Chronic periodontitis is associated with the <i>5-HTT</i> gene rs6354 polymorphism, as well as rs6354/rs12449783 interaction. 31428137 2019
dbSNP: rs12449783
rs12449783
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0266929
Disease:
Chronic Periodontitis
0.010 GeneticVariation BEFREE <b>Conclusion:</b> Chronic periodontitis is associated with the <i>5-HTT</i> gene rs6354 polymorphism, as well as rs6354/rs12449783 interaction. 31428137 2019
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0011570
Disease:
Mental Depression
0.100 GeneticVariation BEFREE 1) Suicide attempters scored highest on the CDSS, while no differences between the three clinical subgroups were detected in the PANSS scores; 2) Suicide attempters were more frequently the carriers of L(A) allele, while subjects in the comparative group were more frequently the carriers of low expression 5-HTTLPR/5-HTT rs25531 haplotype SL(G); 3) No difference was found between the three clinical groups in the 5-HTT VNTR In2 variants; 4) Subjects with 5-HTTLPR/5-HTT rs25531 intermediate expression haplotype (L(A)L(G,)SL(A)) scored higher on the PANSS general psychopathology subscale; 5) There was no association between suicide attempt or ideation and 5-HTTLPR/In2 or 5-HTTLPR/rs25531/In2 haplotype distribution. 22520017 2012
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0011581
Disease:
Depressive disorder
0.100 GeneticVariation BEFREE 1) Suicide attempters scored highest on the CDSS, while no differences between the three clinical subgroups were detected in the PANSS scores; 2) Suicide attempters were more frequently the carriers of L(A) allele, while subjects in the comparative group were more frequently the carriers of low expression 5-HTTLPR/5-HTT rs25531 haplotype SL(G); 3) No difference was found between the three clinical groups in the 5-HTT VNTR In2 variants; 4) Subjects with 5-HTTLPR/5-HTT rs25531 intermediate expression haplotype (L(A)L(G,)SL(A)) scored higher on the PANSS general psychopathology subscale; 5) There was no association between suicide attempt or ideation and 5-HTTLPR/In2 or 5-HTTLPR/rs25531/In2 haplotype distribution. 22520017 2012
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0344315
Disease:
Depressed mood
0.100 GeneticVariation BEFREE 1) Suicide attempters scored highest on the CDSS, while no differences between the three clinical subgroups were detected in the PANSS scores; 2) Suicide attempters were more frequently the carriers of L(A) allele, while subjects in the comparative group were more frequently the carriers of low expression 5-HTTLPR/5-HTT rs25531 haplotype SL(G); 3) No difference was found between the three clinical groups in the 5-HTT VNTR In2 variants; 4) Subjects with 5-HTTLPR/5-HTT rs25531 intermediate expression haplotype (L(A)L(G,)SL(A)) scored higher on the PANSS general psychopathology subscale; 5) There was no association between suicide attempt or ideation and 5-HTTLPR/In2 or 5-HTTLPR/rs25531/In2 haplotype distribution. 22520017 2012
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C1269683
Disease:
Major Depressive Disorder
0.060 GeneticVariation BEFREE 49 patients with major depression and SSRI treatment were genotyped for the 5-HTTLPR locus including the rs25531. 22086748 2012
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0041696
Disease:
Unipolar Depression
0.020 GeneticVariation BEFREE 49 patients with major depression and SSRI treatment were genotyped for the 5-HTTLPR locus including the rs25531. 22086748 2012
dbSNP: rs6355
rs6355
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0004352
Disease:
Autistic Disorder
0.010 GeneticVariation BEFREE Autism associated with low 5-hydroxyindolacetic acid in CSF and the heterozygous SLC6A4 gene Gly56Ala plus 5-HTTLPR L/L promoter variants. 21183371 2011
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0016053
Disease:
Fibromyalgia
0.010 GeneticVariation BEFREE Fibromyalgia patients (n=126) were genotyped regarding the polymorphisms of the TSPO (rs6971) and the serotonin transporter (5-HTTLPR/rs25531). 27448744 2016
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0011581
Disease:
Depressive disorder
0.100 GeneticVariation BEFREE Depression was measured at both diagnostic (major depression according to DSM-IV) and symptomatic (subthreshold depression) levels of caseness, in addition to 5-HTTLPR and rs25531 genotyping and diurnal cortisol measures. 28024274 2017
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0344315
Disease:
Depressed mood
0.100 GeneticVariation BEFREE Depression was measured at both diagnostic (major depression according to DSM-IV) and symptomatic (subthreshold depression) levels of caseness, in addition to 5-HTTLPR and rs25531 genotyping and diurnal cortisol measures. 28024274 2017
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0011570
Disease:
Mental Depression
0.100 GeneticVariation BEFREE Depression was measured at both diagnostic (major depression according to DSM-IV) and symptomatic (subthreshold depression) levels of caseness, in addition to 5-HTTLPR and rs25531 genotyping and diurnal cortisol measures. 28024274 2017
dbSNP: rs3813034
rs3813034
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0030319
Disease:
Panic Disorder
0.010 GeneticVariation BEFREE rs3813034 is a functional polymorphism in the serotonin transporter that alters the balance of the two polyadenylation forms of the serotonin transporter. rs3813034 is a putative risk factor for PD and other behavioral disorders that involve dysregulation of serotonergic neurotransmission. 19969287 2010
dbSNP: rs3813034
rs3813034
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0233514
Disease:
Abnormal behavior
0.010 GeneticVariation BEFREE rs3813034 is a functional polymorphism in the serotonin transporter that alters the balance of the two polyadenylation forms of the serotonin transporter. rs3813034 is a putative risk factor for PD and other behavioral disorders that involve dysregulation of serotonergic neurotransmission. 19969287 2010
dbSNP: rs3813034
rs3813034
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0004930
Disease:
Behavior Disorders
0.010 GeneticVariation BEFREE rs3813034 is a functional polymorphism in the serotonin transporter that alters the balance of the two polyadenylation forms of the serotonin transporter. rs3813034 is a putative risk factor for PD and other behavioral disorders that involve dysregulation of serotonergic neurotransmission. 19969287 2010
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0028768
Disease:
Obsessive-Compulsive Disorder
0.050 GeneticVariation BEFREE A noteworthy lack of association at the LPR, LPR-rs25531 and rare 425V variants suggests that hypotheses about OCD risk need revision to accommodate these new findings, including a possible gender effect. 19806148 2011
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C1269683
Disease:
Major Depressive Disorder
0.060 GeneticVariation BEFREE A variable number of tandem repeats (short (S) vs long (L)) in the promoter region of the serotonin transporter gene (5-HTTLPR) and a functional variant of a single-nucleotide polymorphism (rs25531) in 5-HTTLPR have been recently associated with increased risk for major depressive disorder (MDD). 20090673 2010
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0424295
Disease:
Hyperactive behavior
0.010 GeneticVariation BEFREE Additionally, both the rs6191 and rs25531 SNPs were significantly associated with the attention deficit factor (P = 0.006, P = 0.003, respectively) but not with the hyperactivity/impulsivity factor in the Swanson, Nolan and Pelham-IV Questionnaire (SNAP-IV) scale. 30707907 2019
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0086132
Disease:
Depressive Symptoms
0.040 GeneticVariation BEFREE After stratification for 5-HTTLPR/rs25531, only in S'S' individuals high depressive symptoms were actually associated with sleep onset latency complaint. 25297871 2015
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0524528
Disease:
Pervasive Development Disorder
0.010 GeneticVariation BEFREE Allele-specific associations of 5-HTTLPR/rs25531 with ADHD and autism spectrum disorder. 23123360 2013
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0025193
Disease:
Melancholia
0.010 GeneticVariation BEFREE Also, the more active 5-HTTLPR/5-HTT rs25531 haplotype L(A)L(A) conveyed a significant risk for melancholic depression (OR 2.0; 95%CI 1.3-3.1; P=0.001), again only in the female subsample of patients (OR 2.1; 95%CI 1.1-4.1; P=0.02). 18050262 2008
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0522254
Disease:
Analgesic Overuse Headache
0.010 GeneticVariation BEFREE Although a minor contribution of SLC6A4 variants in the genetic liability of MOH cannot be excluded, haplotype-based analysis of STin2 VNTR and rs1042173T>G polymorphisms allowed to identify a subgroup of MOH patients with a higher number of monthly headache and, possibly, with a more severe disease. 21585624 2012
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0018681
Disease:
Headache
0.010 GeneticVariation BEFREE Although a minor contribution of SLC6A4 variants in the genetic liability of MOH cannot be excluded, haplotype-based analysis of STin2 VNTR and rs1042173T>G polymorphisms allowed to identify a subgroup of MOH patients with a higher number of monthly headache and, possibly, with a more severe disease. 21585624 2012