Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 324
Gene Symbol: APC
APC
0.330 GeneticVariation group BEFREE The mutated genes with positive or negative roles in cell growth or survival in aneuploid gastrointestinal cancer (e.g., APC, K-ras, and p53) are less frequently mutated in near-diploid MMP gastrointestinal tumors. 10383166 1999
Entrez Id: 324
Gene Symbol: APC
APC
0.330 GeneticVariation group BEFREE Established MSH6-null mice present a frequent occurrence of gastrointestinal tumors without microsatellite instability (MI), suggesting the possibility of the APC gene being a mutational target. 9808525 1998
Entrez Id: 641
Gene Symbol: BLM
BLM
0.110 GeneticVariation group BEFREE Mutational studies of 57 sporadic gastrointestinal tumor DNAs revealed the presence of length variations in three of them: (a) BLM; (b) CBL; and (c) HOXA1. 9731483 1998
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.040 GeneticVariation group BEFREE The presence of activating mutations within EGFR in both esophageal and pancreatic adenocarcinomas defines a previously unrecognized subset of gastrointestinal tumors in which EGFR signaling may play an important biological role. 16857803 2006
Entrez Id: 2272
Gene Symbol: FHIT
FHIT
0.030 GeneticVariation group BEFREE The FHIT gene, identified recently in chromosome 3p14.2, shows frequent allelic deletion and aberrant transcripts in gastrointestinal tumors. 9108441 1997
Entrez Id: 2272
Gene Symbol: FHIT
FHIT
0.030 GeneticVariation group BEFREE Potential gastrointestinal tumor suppressor locus at the 3p14.2 FRA3B site identified by homozygous deletions in tumor cell lines. 8640789 1996
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.030 GeneticVariation group BEFREE As expected, KRAS mutations were the most common alteration found (63% of cases); however, the distribution of nucleotide position alterations was more similar to that observed in gastrointestinal tumors than other lung tumors. 26200269 2015
Entrez Id: 5156
Gene Symbol: PDGFRA
PDGFRA
0.020 GeneticVariation group BEFREE Stromal, fibrous, and fatty gastrointestinal tumors in a patient with a PDGFRA gene mutation. 18670346 2008
Entrez Id: 4292
Gene Symbol: MLH1
MLH1
0.020 GeneticVariation group LHGDN Analysis of hMLH1 missense mutations in East Asian patients with suspected hereditary nonpolyposis colorectal cancer. 18094436 2007
Entrez Id: 960
Gene Symbol: CD44
CD44
0.020 GeneticVariation group BEFREE Abnormal retention of intron 9 in CD44 gene transcripts in human gastrointestinal tumors. 7545538 1995
Entrez Id: 5395
Gene Symbol: PMS2
PMS2
0.020 GeneticVariation group BEFREE PMS2 mutations-and perhaps other homozygous mismatch repair mutations-should be considered in any patient presenting with multiple gastrointestinal tumors, since our patient could not be distinguished clinically from cases with attenuated familial adenomatous polyposis or MUTYH-associated polyposis. 17258725 2007
Entrez Id: 5156
Gene Symbol: PDGFRA
PDGFRA
0.020 GeneticVariation group BEFREE In its familial form this disease, which was formerly termed intestinal neurofibromatosis/neurofibromatosis 3b (INF/NF3b), has been included among familial gastrointestinal stromal tumors (GISTs) because of its genotype, described when GIST was the only known PDGFRA-mutant gastrointestinal tumor. 25975287 2015
Entrez Id: 2694
Gene Symbol: CBLIF
CBLIF
0.010 GeneticVariation group BEFREE In its familial form this disease, which was formerly termed intestinal neurofibromatosis/neurofibromatosis 3b (INF/NF3b), has been included among familial gastrointestinal stromal tumors (GISTs) because of its genotype, described when GIST was the only known PDGFRA-mutant gastrointestinal tumor. 25975287 2015
Entrez Id: 6925
Gene Symbol: TCF4
TCF4
0.010 GeneticVariation group BEFREE We carried out a sequencing analysis of the Tcf-4 gene in 41 Japanese patients with gastrointestinal tumors with MSI as well as in cancer cell lines. 11528255 2001
Entrez Id: 3198
Gene Symbol: HOXA1
HOXA1
0.010 GeneticVariation group BEFREE Mutational studies of 57 sporadic gastrointestinal tumor DNAs revealed the presence of length variations in three of them: (a) BLM; (b) CBL; and (c) HOXA1. 9731483 1998
Entrez Id: 149233
Gene Symbol: IL23R
IL23R
0.010 GeneticVariation group BEFREE Meta-analysis shown that IL23R rs1884444 increased the risk of overall disease in allele model (OR = 1.16, 95% CI: 1.08-1.25, P <  .001), and also increased the risk of gastrointestinal tumor (OR = 1.18, 95% CI: 1.05-1.31, P = .005). 31197899 2019
Entrez Id: 5159
Gene Symbol: PDGFRB
PDGFRB
0.010 GeneticVariation group BEFREE Activating mutations of PDGFr have been found in gastrointestinal tumors and the autocrine signaling maintained by this receptor have been described in many tumors. 16632420 2006
Entrez Id: 1874
Gene Symbol: E2F4
E2F4
0.010 GeneticVariation group BEFREE Twenty-two of 59 gastrointestinal tumors (37%) contained E2F-4 mutations; these comprised 5 of 16 gastric tumors (31%), 4 of 12 ulcerative colitis-associated neoplasms (33%, including 1 dysplastic lesion), and 13 of 31 sporadic colorectal cancers (42%). 9192806 1997
Entrez Id: 5304
Gene Symbol: PIP
PIP
0.010 GeneticVariation group BEFREE No case expressed CDX2 (a marker for gastrointestinal tumors), while 85% of the cases expressed at least one of the two typical breast markers (GCDFP15 and mammaglobin), suggesting that these markers may be reliably used for differential diagnosis. 28336164 2017
Entrez Id: 867
Gene Symbol: CBL
CBL
0.010 GeneticVariation group BEFREE The coding region of the Bloom syndrome BLM gene and of the CBL proto-oncogene is mutated in genetically unstable sporadic gastrointestinal tumors. 9731483 1998
Entrez Id: 6934
Gene Symbol: TCF7L2
TCF7L2
0.010 GeneticVariation group BEFREE We carried out a sequencing analysis of the Tcf-4 gene in 41 Japanese patients with gastrointestinal tumors with MSI as well as in cancer cell lines. 11528255 2001
Entrez Id: 2130
Gene Symbol: EWSR1
EWSR1
0.010 GeneticVariation group BEFREE From a molecular point of view, these neoplasias are grouped into 2 main types: (a) sarcomas showing relatively simple karyotypes and translocations, which originate gene fusions (eg, EWS-FLI1 in Ewing sarcoma) or point mutations (eg, c-kit in the gastrointestinal tumors) and (b) sarcomas showing unspecific gene alterations, very complex karyotypes, and no translocations. 20418671 2010
Entrez Id: 887
Gene Symbol: CCKBR
CCKBR
0.010 GeneticVariation group LHGDN Constitutively active CCK2 receptor splice variant increases Src-dependent HIF-1 alpha expression and tumor growth. 16909104 2007
Entrez Id: 3342
Gene Symbol: HTC2
HTC2
0.010 GeneticVariation group BEFREE Analysis of 318 STS by CGH array evidenced a frequent deletion affecting the <i>DMD</i> gene (encoding dystrophin isoforms) in 16.5% of STS, including sarcomas with complex genomics, gastrointestinal tumors (GIST), and synovial sarcomas (SS). 31266185 2019
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.010 GeneticVariation group BEFREE Analysis of the PTEN gene mutation in polyposis syndromes and sporadic gastrointestinal tumors in Japanese patients. 11052475 2000