Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 10006
Gene Symbol: ABI1
ABI1
0.010 GeneticVariation disease BEFREE Furthermore, they highlight a possible role for Abi1 as a marker for early KRAS mutation in hyperplastic polyps. 22808230 2012
Entrez Id: 27
Gene Symbol: ABL2
ABL2
0.010 Biomarker disease BEFREE Our study suggests that Hp infection is not associated with elevated asymmetric dimethylation and citrullination of Arg proteins present in the serum or with the hArg synthesis from free Arg in elderly subjects. 31028565 2019
Entrez Id: 28
Gene Symbol: ABO
ABO
0.010 GeneticVariation disease BEFREE Although several studies have investigated the association between ABO blood type and risk of gastric cancer (GC), atrophic gastritis (AG), and Helicobacter pylori (HP) infection, no study has investigated these associations by using ABO genotype. 21680535 2011
Entrez Id: 9370
Gene Symbol: ADIPOQ
ADIPOQ
0.010 AlteredExpression disease BEFREE The link between Hp phenotype and circulating adiponectin levels were examined. 23177015 2013
Entrez Id: 207
Gene Symbol: AKT1
AKT1
0.010 AlteredExpression disease BEFREE Normal colonic mucosa and hyperplastic polyps exhibited no significant AKT expression, in marked contrast to the dramatic AKT immunoreactivity seen in colorectal cancers (57% positive) and in both human colorectal cancer cell lines examined. 11756242 2002
Entrez Id: 23600
Gene Symbol: AMACR
AMACR
0.010 AlteredExpression disease BEFREE In contrast, only 4% of hyperplastic polyps expressed AMACR. 14642549 2003
Entrez Id: 320
Gene Symbol: APBA1
APBA1
0.020 GeneticVariation disease BEFREE Group II HP showed significantly more methylation than group I HP at all loci except MINT1 and MGMT. 15016754 2004
Entrez Id: 320
Gene Symbol: APBA1
APBA1
0.020 PosttranslationalModification disease BEFREE One hundred and eleven serrated polyps, consisting of 45 HPs (30 microvesicular, 11 goblet cell, 4 mucin depleted) and 56 SSA/Ps (36 with dysplasia, 20 without dysplasia), were retrieved from the pathology files of a large medical center in Korea and 38 SSA/P from American patients were evaluated for BRAF and KRAS mutations, microsatellite instability, and hypermethylation of O6-methylguanine-DNA methyltransferase (MGMT), hMLH1, adenomatous polyposis coli (APC), p16, methylated in tumor-1 (MINT-1), MINT2, and MINT31. 21836485 2011
Entrez Id: 321
Gene Symbol: APBA2
APBA2
0.010 PosttranslationalModification disease BEFREE One hundred and eleven serrated polyps, consisting of 45 HPs (30 microvesicular, 11 goblet cell, 4 mucin depleted) and 56 SSA/Ps (36 with dysplasia, 20 without dysplasia), were retrieved from the pathology files of a large medical center in Korea and 38 SSA/P from American patients were evaluated for BRAF and KRAS mutations, microsatellite instability, and hypermethylation of O6-methylguanine-DNA methyltransferase (MGMT), hMLH1, adenomatous polyposis coli (APC), p16, methylated in tumor-1 (MINT-1), MINT2, and MINT31. 21836485 2011
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE Four patients had a germ-line E1317Q missense variant of APC that was not present in controls; one of these individuals had an unusually large number of metaplastic polyps of the colorectum. 9724771 1998
Entrez Id: 324
Gene Symbol: APC
APC
0.100 Biomarker disease BEFREE This subset combines features of the suppressor and mutator pathways, may be more dependent on K-ras than on the APC gene in the early stages of neoplastic evolution, and a proportion may be related histogenetically to the serrated (hyperplastic) polyp. 10562815 1999
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE We examined the presence of HPs and sessile serrated adenomas (SSAs) in 17 MAP patients and studied the occurrence of G:C-->T:A transversions in the APC and K-ras gene in these polyps. 19013464 2008
Entrez Id: 324
Gene Symbol: APC
APC
0.100 Biomarker disease BEFREE In all samples of normal human and mouse colonic mucosa and in human hyperplastic polyps both APC and beta-catenin immunoreactivity were present in colonocytes. 11062151 2000
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE Therefore, the pedigree was diagnosed as an FAP family with a novel APC germline mutation which had different gastric phenotypes depending on the status of HP infection. 31529234 2019
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE Four hamartomatous polyps (three from JP and one from PJS) showed seven, new mutations and one common APC variant (codon 486), whereas no hyperplastic polyps demonstrated mutation. 10502830 1999
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE The frequency of the APC I1307K mutation is elevated in Ashkenazi Jewish patients with adenomatous polyps, but not hyperplastic polyps. 10938175 2000
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE To investigate the role of a defective 8-oxo-G repair we performed a germline mutation screening in the genes OGG1, MTH1 and MUTYH, in 81 patients with a clinical phenotype ranging from attenuated or atypical adenomatous polyposis coli including hyperplastic polyps to hereditary non-polyposis colorectal cancer (HNPCC) type X syndrome without mono- or biallelic mutations in either APC, MUTYH or the DNA mismatch repair genes. 21195604 2011
Entrez Id: 324
Gene Symbol: APC
APC
0.100 AlteredExpression disease BEFREE Moreover, the presence of somatic APC mutations in fundic gland polyps suggests that inactivation of the APC gene plays a role not only in forming adenomas but also in forming hyperplastic polyps in fundic gland mucosa, and there may be some additional steps to the adenoma-carcinoma sequence. 7606737 1995
Entrez Id: 324
Gene Symbol: APC
APC
0.100 AlteredExpression disease BEFREE Thus, we performed immunohistochemical analysis of hyperplastic polyps (HP), serrated adenomas (SA), and classical adenomas (tubular adenomas - TA and tubulovillous adenomas - TVA) and carcinomas developed from adenomas (CA) using expression of p53, Ki-67, c-myc, APC, MSH2 and Ets-1 proteins. 21892521 2011
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE In this study, 46 serrated adenomas from 39 patients, 32 conventional (nonserrated) adenomas from 31 patients, and 18 hyperplastic polyps from 16 patients were evaluated for loss of heterozygosity (LOH) of APC, p53, p16, and 3p and for K-ras mutations of codons 12, 13, and 61 by polymerase chain reaction (PCR) analysis. 11823977 2002
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE No APC mutations were identified in 12 MHAPs and 8 hyperplastic polyps, whereas 10 of 27 (37.0%) adenomas showed somatic mutations. 9600124 1998
Entrez Id: 7984
Gene Symbol: ARHGEF5
ARHGEF5
0.010 Biomarker disease BEFREE TLR2, TLR4 and TIM1 may be involved in the process of MP infection. 26011190 2015
Entrez Id: 479
Gene Symbol: ATP12A
ATP12A
0.010 GeneticVariation disease BEFREE In this retrospective study, the association between hyperplastic polyps and celiac disease in Northern Sardinia was estimated.Age, gender, body mass index, and medications taken in the 2 preceding months, including proton-pump inhibitors (PPIs), H2 receptor blockers (anti-H2), Helicobacter pylori status, endoscopic findings, and histology from charts of patients undergoing esophago-gastro-duodenoscopy were reviewed. 28151870 2017
Entrez Id: 489
Gene Symbol: ATP2A3
ATP2A3
0.010 AlteredExpression disease BEFREE We report that SERCA3 expression increased along the crypts as cells differentiated in normal colonic mucosa and in hyperplastic polyps, was moderately and heterogeneously expressed in colonic adenomas with expression levels inversely correlated with the degree of dysplasia, was barely detectable in well and moderately differentiated adenocarcinomas, and was absent in poorly differentiated tumors. 15972967 2005
Entrez Id: 495
Gene Symbol: ATP4A
ATP4A
0.010 GeneticVariation disease BEFREE In this retrospective study, the association between hyperplastic polyps and celiac disease in Northern Sardinia was estimated.Age, gender, body mass index, and medications taken in the 2 preceding months, including proton-pump inhibitors (PPIs), H2 receptor blockers (anti-H2), Helicobacter pylori status, endoscopic findings, and histology from charts of patients undergoing esophago-gastro-duodenoscopy were reviewed. 28151870 2017