Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3240
Gene Symbol: HP
HP
0.090 GeneticVariation disease BEFREE Haptoglobin (Hp) phenotypes were studied in 72 oesophageal and 104 gastric cancer patients and compared with 100 healthy controls to see if there is any association between oesophageal and gastric cancer and haptoglobin type. 2709394 1989
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 AlteredExpression disease BEFREE Weak p53 expression was demonstrated by 11.7% of the flat hyperplastic polyps but none of the exophytic polyps reacted. 7559739 1995
Entrez Id: 324
Gene Symbol: APC
APC
0.100 AlteredExpression disease BEFREE Moreover, the presence of somatic APC mutations in fundic gland polyps suggests that inactivation of the APC gene plays a role not only in forming adenomas but also in forming hyperplastic polyps in fundic gland mucosa, and there may be some additional steps to the adenoma-carcinoma sequence. 7606737 1995
Entrez Id: 4582
Gene Symbol: MUC1
MUC1
0.030 Biomarker disease BEFREE We suggest that hyperplastic polyps are formed of a lineage that both synthesizes and secretes trefoil-peptides and the MUC1 mucin and that hyperplastic polyps may be related to the phenotypically similar ulceration-associated cell lineage. 7681255 1993
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 Biomarker disease BEFREE Intestinal metaplasia, normal gastric mucosa, and 14/18 hyperplastic polyps were nonreactive. p53 Reactivity observed in four hyperplastic polyps was limited to adenomatous foci. 8237942 1993
Entrez Id: 4316
Gene Symbol: MMP7
MMP7
0.020 AlteredExpression disease BEFREE The enzyme activities of matrilysin were detected in cancer tissue and adenoma tissue, whereas they were hardly detectable in hyperplastic polyps, mildly inflamed regions of ulcerative colitis, and normal colon tissue. 8608568 1996
Entrez Id: 3240
Gene Symbol: HP
HP
0.090 Biomarker disease BEFREE The observed shift in Hp phenotype distribution in chronic hepatitis C may point to a role of Hp in the natural evolution of hepatitis C. 8836895 1996
Entrez Id: 140453
Gene Symbol: MUC17
MUC17
0.020 Biomarker disease BEFREE Expression of MUC1, MUC2, and MUC3 core tandem repeat proteins was examined in specimens of normal mucosa (n = 20), hyperplastic polyps (n = 10), adenomatous polyps (n = 89), and invasive cancer (n = 19). 8859775 1996
Entrez Id: 4584
Gene Symbol: MUC3A
MUC3A
0.010 Biomarker disease BEFREE Expression of MUC1, MUC2, and MUC3 core tandem repeat proteins was examined in specimens of normal mucosa (n = 20), hyperplastic polyps (n = 10), adenomatous polyps (n = 89), and invasive cancer (n = 19). 8859775 1996
Entrez Id: 57876
Gene Symbol: MUC3B
MUC3B
0.010 Biomarker disease BEFREE Expression of MUC1, MUC2, and MUC3 core tandem repeat proteins was examined in specimens of normal mucosa (n = 20), hyperplastic polyps (n = 10), adenomatous polyps (n = 89), and invasive cancer (n = 19). 8859775 1996
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 Biomarker disease BEFREE A mutation of the K-ras gene was detected in nine (47%) of 19 hyperplastic polyps, and five (56%) of nine adenomas. p53 protein nuclear accumulation was detected immunohistochemically in two (22%) of nine adenomas, but not in any of the hyperplastic polyps. 9203947 1997
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE No APC mutations were identified in 12 MHAPs and 8 hyperplastic polyps, whereas 10 of 27 (37.0%) adenomas showed somatic mutations. 9600124 1998
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 Biomarker disease BEFREE PCNA positivity gradually increased in the sequence from HP to AC and were significantly higher in AC compared to HP (90% vs 44%; p = 0.00007). p53 positive cells were found in 67% of AC while only occasionally in other groups (HP vs AC: p = 0.0002, AD (low dysplasia) vs AC: p = 0.001; AD (moderate dysplasia) vs AC: p = 0.001). 9673389 1998
Entrez Id: 5111
Gene Symbol: PCNA
PCNA
0.010 Biomarker disease BEFREE These results demonstrated a progressive immunoreactivity for PCNA in the HP to AC sequence, while p53 positivity and aneuploidy seemed specific for colon carcinoma. 9673389 1998
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE Four patients had a germ-line E1317Q missense variant of APC that was not present in controls; one of these individuals had an unusually large number of metaplastic polyps of the colorectum. 9724771 1998
Entrez Id: 6513
Gene Symbol: SLC2A1
SLC2A1
0.010 Biomarker disease BEFREE No Glut1 immunoreactivity was present in normal colonic mucosa or in hyperplastic polyps, whereas 8 (10%) of 82 adenomas showed such immunoreactivity. 9816281 1996
Entrez Id: 4586
Gene Symbol: MUC5AC
MUC5AC
0.040 Biomarker disease BEFREE MUC5AC and MUC6 staining were rarely detected and of low intensity in normal colon and hyperplastic polyps. 9935202 1999
Entrez Id: 4588
Gene Symbol: MUC6
MUC6
0.030 Biomarker disease BEFREE MUC5AC and MUC6 staining were rarely detected and of low intensity in normal colon and hyperplastic polyps. 9935202 1999
Entrez Id: 10
Gene Symbol: NAT2
NAT2
0.030 Biomarker disease BEFREE Never-smokers showed no variation in risk across acetylator status for either species of polyp, whereas current smokers showed ORs of 2.0 (1.2-3.2) and 2.3 (1.4-3.9) for adenomas and 3.9 (2.1-7.1) and 4.9 (2.6-9.4) for hyperplastic polyps for slow and intermediate/fast NAT2, respectively, compared with slow-NAT2 never-smokers. 9950242 1999
Entrez Id: 1401
Gene Symbol: CRP
CRP
0.030 Biomarker disease BEFREE No significant differences were demonstrated between the Hp phenotypes in HDL cholesterol, apo A-I, apo E, Lp(a), cholesteryl esters, fibrinogen and C-reactive protein concentrations, although for the latter an increase was noticed in Hp 2-2. 10217368 1999
Entrez Id: 4583
Gene Symbol: MUC2
MUC2
0.010 Biomarker disease BEFREE Hyperplastic polyps and serrated adenomas of the colorectum show mixed gastrointestinal differentiation, expressing both gastric (M1 or MUC5AC) and intestinal (MUC2) mucins. 10398112 1999
Entrez Id: 324
Gene Symbol: APC
APC
0.100 GeneticVariation disease BEFREE Four hamartomatous polyps (three from JP and one from PJS) showed seven, new mutations and one common APC variant (codon 486), whereas no hyperplastic polyps demonstrated mutation. 10502830 1999
Entrez Id: 6794
Gene Symbol: STK11
STK11
0.010 GeneticVariation disease BEFREE Four hamartomatous polyps (three from JP and one from PJS) showed seven, new mutations and one common APC variant (codon 486), whereas no hyperplastic polyps demonstrated mutation. 10502830 1999
Entrez Id: 570
Gene Symbol: BAAT
BAAT
0.010 Biomarker disease BEFREE BAT-26 positivity was detected in 1 of 6 hyperplastic polyps (16.7%) and in 2 of 10 adenomas (20%) without malignant transformation. 10547536 1999
Entrez Id: 324
Gene Symbol: APC
APC
0.100 Biomarker disease BEFREE This subset combines features of the suppressor and mutator pathways, may be more dependent on K-ras than on the APC gene in the early stages of neoplastic evolution, and a proportion may be related histogenetically to the serrated (hyperplastic) polyp. 10562815 1999