Source: ALL
Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1057518960
rs1057518960
GJA1
C 0.700 GeneticVariation CLINVAR

dbSNP: rs1364709483
rs1364709483
TBX2 ; TBX2-AS1
A 0.700 CausalMutation CLINVAR

dbSNP: rs1558027212
rs1558027212
TMCO1
G 0.700 GeneticVariation CLINVAR

dbSNP: rs587783446
rs587783446
CHD7
T 0.700 CausalMutation CLINVAR

dbSNP: rs1217691063
rs1217691063
MTHFR
0.040 GeneticVariation BEFREE Infant C677T mutation in MTHFR, maternal periconceptional vitamin use, and cleft lip. 9843036

1998
dbSNP: rs2235371
rs2235371
IRF6
0.740 GeneticVariation BEFREE We carried out transmission-disequilibrium testing for V274I in 8003 individual subjects in 1968 families derived from 10 populations with ancestry in Asia, Europe, and South America, haplotype and linkage analyses, and case-control analyses, and determined the risk of cleft lip or palate that is associated with genetic variation in IRF6. 15317890

2004
dbSNP: rs2235371
rs2235371
IRF6
0.740 GeneticVariation BEFREE Association analysis between the IRF6 G820A polymorphism and nonsyndromic cleft lip and/or cleft palate in a Chinese population. 19115793

2009
dbSNP: rs7017252
rs7017252
CCDC26
0.800 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs987525
rs987525
CCDC26
A 0.800 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs987525
rs987525
CCDC26
A 0.800 GeneticVariation GWASCAT Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs10956453
rs10956453
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs11506137
rs11506137
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs1155582
rs1155582
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs11994831
rs11994831
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs12546244
rs12546244
CCDC26 ; LINC00976
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs12546523
rs12546523
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs12547241
rs12547241
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs13265167
rs13265167
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs13274247
rs13274247
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs1372449
rs1372449
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs1372995
rs1372995 		0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs1432017
rs1432017
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs1441994
rs1441994
CCDC26 ; LINC00976
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs17241253
rs17241253
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs17820135
rs17820135
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009