Source: ALL
Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs10130587
rs10130587
BMP4
0.010 GeneticVariation BEFREE This study analyzed the association between the BMP4 gene polymorphisms rs762642, rs17563, and rs10130587 with the risk of cleft lip only (CLO), cleft palate only (CPO), and cleft lip with palate (CLP) in a population from South China. 29860186

2018
dbSNP: rs10133673
rs10133673
SLC25A21
G 0.700 GeneticVariation GWASCAT Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity. 28232668

2017
dbSNP: rs10174126
rs10174126
SH3BP4
0.700 GeneticVariation GWASDB Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts. 22419666

2012
dbSNP: rs1030608
rs1030608
CCDC26
0.700 GeneticVariation GWASDB Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. 22863734

2012
dbSNP: rs1030609
rs1030609
CCDC26
0.700 GeneticVariation GWASDB Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. 22863734

2012
dbSNP: rs1038294
rs1038294
COL8A1
G 0.700 GeneticVariation GWASCAT Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity. 28232668

2017
dbSNP: rs1044516
rs1044516
IRF6 ; C1orf74
0.700 GeneticVariation GWASDB A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs10462065
rs10462065 		A 0.700 GeneticVariation GWASCAT Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity. 28232668

2017
dbSNP: rs10511145
rs10511145 		0.700 GeneticVariation GWASDB Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. 22863734

2012
dbSNP: rs10512248
rs10512248
PTCH1
A 0.700 GeneticVariation GWASCAT Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity. 28232668

2017
dbSNP: rs1057518960
rs1057518960
GJA1
C 0.700 GeneticVariation CLINVAR

dbSNP: rs10719
rs10719
DROSHA
0.010 GeneticVariation BEFREE Two SNPs were associated with the susceptibility of CL/P: rs10719 in DROSHA led to an increased risk of cleft lip with or without palate (CL/P) (GA/AA: p = .024, OR = 1.33, 95% CI = [1.04, 1.70]; GG + GA/AA: p = .037, OR = 1.29, 95% CI = [1.02, 1.63]), while rs493760 in DROSHA (CC/TT: p = .049, OR = 0.58, 95% CI = [0.34, 0.99]) could reduce the risk of CL/P. 28833944

2018
dbSNP: rs10779526
rs10779526 		0.700 GeneticVariation GWASDB A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs10779526
rs10779526 		0.700 GeneticVariation GWASDB Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. 22863734

2012
dbSNP: rs10808576
rs10808576
CCDC26
0.700 GeneticVariation GWASDB Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. 22863734

2012
dbSNP: rs10808812
rs10808812
ZFHX4-AS1 ; LOC107986952
0.700 GeneticVariation GWASCAT Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ± cleft palate and cleft palate only. 28087736

2017
dbSNP: rs10863790
rs10863790 		0.800 GeneticVariation GWASCAT A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs10863790
rs10863790 		0.800 GeneticVariation GWASDB A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs10886040
rs10886040
SHTN1
0.700 GeneticVariation GWASCAT Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate. 28054174

2017
dbSNP: rs10956453
rs10956453
CCDC26
0.700 GeneticVariation GWASDB Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. 19270707

2009
dbSNP: rs11066150
rs11066150
NAA25
G 0.700 GeneticVariation GWASCAT Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity. 28232668

2017
dbSNP: rs11072494
rs11072494
ARID3B
0.700 GeneticVariation GWASCAT Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate. 28054174

2017
dbSNP: rs11119388
rs11119388
SYT14
0.700 GeneticVariation GWASDB A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs112800917
rs112800917
LOC105373887
0.700 GeneticVariation GWASCAT Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ± cleft palate and cleft palate only. 28087736

2017
dbSNP: rs11362
rs11362
DEFB1
0.010 GeneticVariation BEFREE The genetic variant rs11362 in DEFB 1 influences caries susceptibility in CL/P children. 23964634

2014