Source: ALL
Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs12543318
rs12543318 		0.810 GeneticVariation GWASDB A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs12543318
rs12543318 		0.810 GeneticVariation GWASCAT Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate. 28054174

2017
dbSNP: rs12543318
rs12543318 		0.810 GeneticVariation BEFREE Homozygote C/C at rs12543318 was risk factor for non-syndromic cleft lip only from Western Han Chinese population. 29683526

2018
dbSNP: rs13041247
rs13041247
LOC102724968
0.810 GeneticVariation BEFREE Non-syndromic cleft lip with or without palate-susceptible loci rs4791774 (A > G) and rs13041247 (T > C) were associated with the risk of supernumerary teeth. 31233659

2019
dbSNP: rs13041247
rs13041247
LOC102724968
0.810 GeneticVariation GWASDB SNPs near two genes not previously associated with cleft lip with and without cleft palate (MAFB, most significant SNP rs13041247, with odds ratio (OR) per minor allele = 0.704, 95% CI 0.635-0.778, P = 1.44 x 10(-11); and ABCA4, most significant SNP rs560426, with OR = 1.432, 95% CI 1.292-1.587, P = 5.01 x 10(-12)) and two previously identified regions (at chromosome 8q24 and IRF6) attained genome-wide significance. 20436469

2010
dbSNP: rs10863790
rs10863790 		0.800 GeneticVariation GWASCAT A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs10863790
rs10863790 		0.800 GeneticVariation GWASDB A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs11841646
rs11841646 		0.800 GeneticVariation GWASDB Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. 22863734

2012
dbSNP: rs11841646
rs11841646 		0.800 GeneticVariation GWASCAT Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate. 28054174

2017
dbSNP: rs17085106
rs17085106
LINC01899
0.800 GeneticVariation GWASCAT A genome-wide association study identifies a locus for nonsyndromic cleft lip with or without cleft palate on 8q24. 19656524

2009
dbSNP: rs17085106
rs17085106
LINC01899
0.800 GeneticVariation GWASDB A genome-wide association study identifies a locus for nonsyndromic cleft lip with or without cleft palate on 8q24. 19656524

2009
dbSNP: rs1873147
rs1873147 		0.800 GeneticVariation GWASDB Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate. 20023658

2010
dbSNP: rs1873147
rs1873147 		0.800 GeneticVariation GWASCAT Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology. 30067744

2018
dbSNP: rs2064163
rs2064163 		0.800 GeneticVariation GWASDB A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs2064163
rs2064163 		0.800 GeneticVariation GWASDB Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. 22863734

2012
dbSNP: rs227731
rs227731 		0.800 GeneticVariation GWASCAT Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate. 28054174

2017
dbSNP: rs227731
rs227731 		0.800 GeneticVariation GWASCAT Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology. 30067744

2018
dbSNP: rs2294426
rs2294426
ADTRP
0.800 GeneticVariation GWASCAT Evidence for gene-environment interaction in a genome wide study of nonsyndromic cleft palate. 21618603

2011
dbSNP: rs2294426
rs2294426
ADTRP
0.800 GeneticVariation GWASDB Evidence for gene-environment interaction in a genome wide study of nonsyndromic cleft palate. 21618603

2011
dbSNP: rs2872615
rs2872615 		0.800 GeneticVariation GWASDB Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. 22863734

2012
dbSNP: rs4132699
rs4132699
SEMA4D
0.800 GeneticVariation GWASCAT Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ± cleft palate and cleft palate only. 28087736

2017
dbSNP: rs4132699
rs4132699
SEMA4D
0.800 GeneticVariation GWASDB Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. 22863734

2012
dbSNP: rs481931
rs481931
ABCA4
0.800 GeneticVariation GWASDB A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs6072081
rs6072081
LOC102724968
0.800 GeneticVariation GWASDB A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. 20436469

2010
dbSNP: rs6072081
rs6072081
LOC102724968
0.800 GeneticVariation GWASCAT Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate. 28054174

2017