Source: ALL
Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs4664308
rs4664308
PLA2R1 ; LOC105373717
0.010 GeneticVariation BEFREE PLA2R1 displayed a nominally significantly genetic association with SLE [for rs4664308, P = 0.02, odds ratio (OR) 1.16, 95 % confidence interval (CI) 1.02-1.31; for rs3792192, P = 7.9 × 10(-3), OR 1.18, 95 % CI 1.05-1.34] and LN (for rs4664308, P = 0.04). 26645973

2016
dbSNP: rs117026326
rs117026326
GTF2I ; LOC101926943
0.010 GeneticVariation BEFREE Patients carrying genotype TT of rs117026326 had lower 24-hour urinary total protein (24 hours UTP, g/24 hours), 24-hour urinary protein level (g/L·24 hours), lower frequency of the proteinuria and lupus nephritis (LN). 31374066

2019
dbSNP: rs7708392
rs7708392
TNIP1
0.020 GeneticVariation BEFREE Our results suggested that TNIP1 SNP (rs7708392) might be associated with the LN</span> in Egyptian SLE patients. 29589214

2018
dbSNP: rs1456896
rs1456896 		0.010 GeneticVariation BEFREE Our results suggest that the rs1456896 A allele is associated with protective susceptibility to LN. 27684961

2017
dbSNP: rs1143679
rs1143679
ITGAM
0.020 GeneticVariation BEFREE Our meta-analyses confirm that the ITGAM rs1143679 polymorphism is associated with SLE susceptibility in different ethnic groups and demonstrate that the polymorphism is associated with LN in European. 25315704

2015
dbSNP: rs1635564
rs1635564
PADI4
0.010 GeneticVariation BEFREE Notably, gene dose effects of the rs1635564 variant allele were observed for SLE (p = 0.005) and LN (p = 0.01). 30269634

2019
dbSNP: rs5744168
rs5744168
TLR5
0.010 GeneticVariation BEFREE No allelic nor genotype association was found with TLR-5-rs5744168 in SLE. but the T allele and the TT genotype were raised significantly in the LN group (P < 0·05). 28763101

2017
dbSNP: rs2157257
rs2157257
MYH9
0.010 GeneticVariation BEFREE Multiple peaks of association exceeding a Bonferroni corrected P-value of P < 2.03 × 10(-3) were observed between LN and MYH9 in EAs (N = 4620), with the most pronounced association at rs2157257 (P = 4.7 × 10(-4), odds ratio (OR) = 1.205). 22189356

2012
dbSNP: rs6897932
rs6897932
IL7R
0.010 GeneticVariation BEFREE Moreover, association studies were also performed contraposing the relationship between the SNP rs6897932 C/T and lupus nephritis as well as 10 clinical features of SLE; however, no significant association signal was found regarding the distribution of allele and genotype frequencies between SLE patients positive and negative for the presence of 11 sub-phenotypes. 24242875

2014
dbSNP: rs1364989
rs1364989 		T 0.700 GeneticVariation GWASCAT Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. 24925725

2014
dbSNP: rs2647012
rs2647012 		0.700 GeneticVariation GWASCAT Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. 24925725

2014
dbSNP: rs274068
rs274068
SLC5A11
C 0.700 GeneticVariation GWASCAT Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. 24925725

2014
dbSNP: rs601162
rs601162 		A 0.700 GeneticVariation GWASCAT Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. 24925725

2014
dbSNP: rs7773456
rs7773456 		0.700 GeneticVariation GWASCAT Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. 24925725

2014
dbSNP: rs7834765
rs7834765
LOC107986971
T 0.700 GeneticVariation GWASCAT Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. 24925725

2014
dbSNP: rs8012283
rs8012283
NIN
G 0.700 GeneticVariation GWASCAT Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. 24925725

2014
dbSNP: rs329498
rs329498
PELI1
0.010 GeneticVariation BEFREE Likewise, the rs329498 SNP was also associated with the clinical features LN and malar rash in SLE patients. 27018966

2016
dbSNP: rs3743930
rs3743930
MEFV
0.010 GeneticVariation BEFREE In this regard, absence of the E148Q mutation in SLE</span> nephritis may serve as a clue for further investigation into its role as a general modulatory polymorphism for inflammation. 25413357

2015
dbSNP: rs11889341
rs11889341
STAT4
0.010 GeneticVariation BEFREE In the case-control analysis of cohort I, four highly linked SNPs in STAT4 were associated with lupus nephritis with genome wide significance with p = 3.7 × 10(-9), OR 2.20 for the best SNP rs11889341. 24386384

2013
dbSNP: rs2397084
rs2397084
IL17F
0.010 GeneticVariation BEFREE IL-17A rs2275913, IL-17F rs763780 and rs2397084 are not related to the LN development, SLE disease activity or overall survival. 26515887

2016
dbSNP: rs763780
rs763780
IL17F
0.010 GeneticVariation BEFREE IL-17A rs2275913, IL-17F rs763780 and rs2397084 are not related to the LN development, SLE disease activity or overall survival. 26515887

2016
dbSNP: rs2275913
rs2275913
IL17A
0.010 GeneticVariation BEFREE IL-17A rs2275913, IL-17F rs763780 and rs2397084 are not related to the LN development, SLE disease activity or overall survival. 26515887

2016
dbSNP: rs1799964
rs1799964
LTA ; TNF ; LOC100287329
0.010 GeneticVariation BEFREE Here, we aimed to examine whether the TNF -238G/A, -308G/A, -376G/A (rs1800750), and -1031T/C (rs1799964) polymorphisms confer SLE or lupus nephritis (LN) susceptibility in a Mexican population. 29611038

2018
dbSNP: rs7848647
rs7848647
TNFSF15
0.010 GeneticVariation BEFREE Genotypes distribution of rs6478109, rs7848647 were strongly related to lupus nephritis within SLE (p = 0.004, p = 0.011), respectively. 31081141

2019
dbSNP: rs6478109
rs6478109
TNFSF15
0.010 GeneticVariation BEFREE Genotypes distribution of rs6478109, rs7848647 were strongly related to lupus nephritis within SLE (p = 0.004, p = 0.011), respectively. 31081141

2019