DisGeNET - a database of gene-disease associations

List of shared variants

Rheumatoid Arthritis, C0003873

Disease: Lupus Erythematosus, Systemic

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1131691014	TP53	0.439	0.800	17	7676154	frameshift variant	-/C	ins			214
rs878854066	TP53	0.439	0.800	17	7676153	missense variant	GG/AC	mnv			213
rs17860508	LOC285626	0.752	0.360	5	159333192	intron variant	TTAGAG/GC	delins			11
rs5844572	MIF ; MIF-AS1	0.752	0.360	22	23893562	intron variant	-/ATTC	delins			11
rs1003878	TSBP1-AS1 ; TSBP1	0.882	0.200	6	32332045	stop gained	G/A	snv	0.19	0.23	3
rs10168266	STAT4	0.776	0.400	2	191071078	intron variant	C/T	snv		0.19	8
rs10174238	STAT4	0.724	0.200	2	191108308	intron variant	G/A	snv		0.70	14
rs10181656	STAT4	0.763	0.360	2	191105153	intron variant	G/C	snv		0.79	9
rs1042522	TP53	0.426	0.800	17	7676154	missense variant	G/C;T	snv	0.67		242
rs1045642	ABCB1	0.456	0.840	7	87509329	synonymous variant	A/G;T	snv	0.50		214
rs10488631	TNPO3	0.742	0.280	7	128954129	upstream gene variant	T/C	snv		9.0E-02	13
rs10499194		0.752	0.400	6	137681500	intron variant	C/T	snv		0.24	10
rs1050501	FCGR2B	0.732	0.440	1	161674008	missense variant	T/C	snv	0.16	0.19	15
rs10516487	BANK1	0.752	0.360	4	101829919	missense variant	G/A;T	snv	0.26; 8.0E-06		11
rs1051792	MICA	0.851	0.240	6	31411200	missense variant	G/A	snv	0.34	0.35	5
rs1059702	IRAK1	0.807	0.280	X	154018741	missense variant	A/G	snv	0.72		7
rs1061170	CFH	0.561	0.720	1	196690107	missense variant	C/T	snv	0.68	0.64	72
rs1061622	TNFRSF1B	0.633	0.760	1	12192898	missense variant	T/G	snv	0.22	0.22	33
rs1063320	HLA-G	0.752	0.360	6	29830972	3 prime UTR variant	C/G;T	snv			12
rs1077393	BAG6	0.882	0.200	6	31642752	non coding transcript exon variant	A/G	snv		0.44	3
rs10818488	C5-OT1	0.776	0.360	9	120942809	regulatory region variant	A/G	snv		0.51	8
rs10840759	CLEC4A	0.882	0.200	12	8138610	intron variant	C/T	snv		0.28	3
rs10889677	IL23R	0.627	0.720	1	67259437	3 prime UTR variant	C/A	snv		0.27	40
rs10954213	IRF5	0.752	0.200	7	128949373	3 prime UTR variant	G/A	snv		0.58	11
rs10954214	IRF5	0.851	0.160	7	128949579	3 prime UTR variant	C/T	snv		0.64	4