DisGeNET - a database of gene-disease associations

List of shared variants

Rheumatoid Arthritis, C0003873

Disease: Lupus Erythematosus, Systemic

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs13101828	DGKQ	0.851	0.160	4	971932	intron variant	A/G	snv		0.43	6
rs854560	PON1	0.513	0.800	7	95316772	missense variant	A/C;G;N;T	snv	0.29		113
rs662	PON1	0.485	0.840	7	95308134	missense variant	T/C	snv	0.38	0.42	157
rs1800682	ACTA2 ; FAS	0.637	0.440	10	88990206	non coding transcript exon variant	A/G	snv		0.54	32
rs2234767	FAS ; ACTA2	0.649	0.280	10	88989499	intron variant	G/A;T	snv	0.15		30
rs9138	SPP1	0.776	0.360	4	87983190	3 prime UTR variant	A/C;T	snv			12
rs1045642	ABCB1	0.456	0.840	7	87509329	synonymous variant	A/G;T	snv	0.50		214
rs340630	AFF1	0.925	0.120	4	87037243	intron variant	G/A	snv		0.42	2
rs35929052		0.827	0.160	16	85960878	downstream gene variant	C/G;T	snv			5
rs10840759	CLEC4A	0.882	0.200	12	8138610	intron variant	C/T	snv		0.28	3
rs2377422	CLEC4A	0.882	0.200	12	8128312	intron variant	C/T	snv		0.60	3
rs721917	SFTPD	0.752	0.360	10	79946568	missense variant	A/G	snv	0.47	0.42	14
rs1801394	FASTKD3 ; MTRR	0.531	0.840	5	7870860	missense variant	A/G	snv	0.47	0.45	101
rs1042522	TP53	0.426	0.800	17	7676154	missense variant	G/C;T	snv	0.67		242
rs1131691014	TP53	0.439	0.800	17	7676154	frameshift variant	-/C	ins			214
rs878854066	TP53	0.439	0.800	17	7676153	missense variant	GG/AC	mnv			213
rs13447	NCF1C	0.882	0.200	7	75166663	non coding transcript exon variant	T/A;C	snv	1.9E-02		4
rs34933034	CSK	0.925	0.120	15	74787133	intron variant	G/A;T	snv			3
rs201802880	NCF1	0.882	0.200	7	74779296	missense variant	G/A	snv	1.1E-03		4
rs117026326	LOC101926943 ; GTF2I	0.752	0.440	7	74711703	intron variant	C/T	snv		1.3E-02	10
rs193107685		0.851	0.160	7	74123572	downstream gene variant	T/C	snv		1.0E-02	4
rs763361	CD226	0.689	0.520	18	69864406	missense variant	T/A;C	snv	4.0E-06; 0.52		21
rs1353702185	MDM2	0.550	0.720	12	68839311	missense variant	C/G	snv	4.0E-06		79
rs911263	RAD51B	0.851	0.200	14	68286876	intron variant	C/T	snv		0.57	4
rs2069705	IFNG-AS1 ; IFNG	0.695	0.440	12	68161231	intron variant	G/A;C	snv			19