Disease: Lupus Erythematosus, Systemic
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 121
rs9271366 0.807 0.240 6 32619077 intergenic variant G/A snv 0.86 9
rs6457374
HLA-B ; LOC112267902
0.851 0.200 6 31304484 intron variant C/T snv 0.81 9
rs6659932
IL12RB2
0.827 0.240 1 67336688 intron variant A/C snv 0.81 5
rs1883832
CD40
0.581 0.680 20 46118343 5 prime UTR variant T/C snv 0.75 0.80 52
rs389883
CYP21A2 ; STK19
0.827 0.200 6 31979683 non coding transcript exon variant G/T snv 0.80 6
rs7574865
STAT4
0.574 0.720 2 191099907 intron variant T/G snv 0.79 59
rs10181656
STAT4
0.763 0.360 2 191105153 intron variant G/C snv 0.79 9
rs437179
SKIV2L ; CYP21A2
0.882 0.160 6 31961237 missense variant A/C snv 0.76 0.78 3
rs2221903
IL21-AS1 ; IL21
0.752 0.360 4 122617757 intron variant C/T snv 0.77 12
rs548234
ATG5
0.763 0.360 6 106120159 intron variant C/T snv 0.76 11
rs659445
EHMT2 ; CYP21A2 ; C2
0.882 0.160 6 31896527 intron variant G/A;C snv 0.77 0.76 3
rs3810936
TNFSF15
0.742 0.320 9 114790605 synonymous variant T/C snv 0.71 0.75 12
rs802791
ATG5
0.851 0.160 6 106121395 intron variant T/C snv 0.75 4
rs6478109
TNFSF15
0.752 0.320 9 114806486 upstream gene variant A/G snv 0.74 12
rs7848647
TNFSF15
0.732 0.320 9 114806766 upstream gene variant T/C snv 0.74 13
rs8193036
IL17A
0.689 0.600 6 52185695 upstream gene variant C/T snv 0.72 21
rs25487
XRCC1
0.441 0.800 19 43551574 missense variant T/C snv 0.68 0.71 205
rs1800795
IL6-AS1 ; IL6 ; STEAP1B
0.494 0.840 7 22727026 intron variant C/G snv 0.71 140
rs2910164
MIR3142HG ; MIR146A
0.447 0.880 5 160485411 mature miRNA variant C/G snv 0.71; 4.1E-06 0.70 193
rs10174238
STAT4
0.724 0.200 2 191108308 intron variant G/A snv 0.70 14
rs708035
IRAK2
0.925 0.120 3 10234479 missense variant T/A snv 0.73 0.70 2
rs1800871
IL19 ; IL10
0.508 0.800 1 206773289 5 prime UTR variant A/G snv 0.69 108
rs1800872
IL19 ; IL10
0.495 0.840 1 206773062 5 prime UTR variant T/G snv 0.69 119
rs2010963
VEGFA
0.542 0.840 6 43770613 5 prime UTR variant C/G snv 0.68 82