SLC6A4, solute carrier family 6 member 4, 6532

N. diseases: 440; N. variants: 28
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0344315
Disease:
Depressed mood
0.100 GeneticVariation BEFREE Gender-specific association between serotonin transporter polymorphisms (5-HTTLPR and rs25531) and neuroticism, anxiety and depression in well-defined healthy Han Chinese. 27788383 2017
dbSNP: rs2020936
rs2020936
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0006868
Disease:
Cannabis Abuse
0.010 GeneticVariation BEFREE Given the link between depression, anxiety, and cannabis abuse, a serotonin receptor (rs6311) and transporter polymorphism (rs2020936) were examined as moderators of neural response as measured by functional magnetic resonance imaging following a psychosocial treatment for cannabis use disorders (CUDs). 23217578 2012
dbSNP: rs2020936
rs2020936
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C3160814
Disease:
Cannabis use
0.010 GeneticVariation BEFREE Given the link between depression, anxiety, and cannabis abuse, a serotonin receptor (rs6311) and transporter polymorphism (rs2020936) were examined as moderators of neural response as measured by functional magnetic resonance imaging following a psychosocial treatment for cannabis use disorders (CUDs). 23217578 2012
dbSNP: rs25532
rs25532
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0028768
Disease:
Obsessive-Compulsive Disorder
0.030 GeneticVariation BEFREE Haplotype-based testing of rs25532 and all other known non-coding functional SLC6A4 variants revealed a highly significant omnibus association with OCD in a large case-control sample. 18055562 2008
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C2937365
Disease:
Recurrent aphthous ulcer
0.010 GeneticVariation BEFREE However, the haplotype analysis detected a higher frequency of LA12 (HTTLPR, rs25531, STin2) haplotype in RAS patients in comparison with healthy controls (P < 0.05, OR = 1.63, 95 % CI = 1.07-2.49). 31846848 2020
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0039494
Disease:
Temporomandibular Joint Disorders
0.010 GeneticVariation BEFREE In 5HTT, the rs1042173 was associated with painful TMD (arthralgia and myofascial pain) (OR<sub>c</sub>  = 1.97; CI 95%: 1.02-3.77; P = 0.04). 30811655 2019
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0003862
Disease:
Arthralgia
0.010 GeneticVariation BEFREE In 5HTT, the rs1042173 was associated with painful TMD (arthralgia and myofascial pain) (OR<sub>c</sub>  = 1.97; CI 95%: 1.02-3.77; P = 0.04). 30811655 2019
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0553642
Disease:
Soft tissue rheumatism
0.010 GeneticVariation BEFREE In 5HTT, the rs1042173 was associated with painful TMD (arthralgia and myofascial pain) (OR<sub>c</sub>  = 1.97; CI 95%: 1.02-3.77; P = 0.04). 30811655 2019
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0036341
Disease:
Schizophrenia
0.010 GeneticVariation BEFREE In Caucasians, a GG genotype of rs1042173 may be a risk factor for schizophrenia (<i>P<sub>z</sub></i> =0.006, OR =1.299, 95% CI =1.079-1.565). 30643413 2019
dbSNP: rs4795541
rs4795541
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0520909
Disease:
Postoperative Nausea and Vomiting
0.010 GeneticVariation BEFREE In Cohort A, the main predictors for PONV were female sex [OR (95% CI): 3.6 (2.7 to 4.8), P < 0.0001], nonsmoking status 1.8 (1.3 to 2.5), P < 0.001, the SS genotype (5-HTTLPR, rs4795541) of the promoter polymorphism in the serotonin transporter 1.5 (1.1 to 2.1), P = 0.019, and patient age 0.99 (0.98 to 0.99), P = 0.013. 31274544 2019
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0033038
Disease:
Premature Ejaculation
0.010 GeneticVariation BEFREE In order to establish a possible pathogenetic link between PE and SLC6A4 polymorphisms, we analyzed the 5-HTT-linked polymorphic region (5-HTTLPR), rs25531, and STin2 polymorphisms in 121 patients affected by lifelong and acquired PE. 22489680 2012
dbSNP: rs4795541
rs4795541
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0751072
Disease:
Frontotemporal Lobar Degeneration
0.010 GeneticVariation BEFREE In summary, the rs4795541 might be important for FTLD susceptibility in the Italian population. 19020798 2008
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C1510472
Disease:
Drug Dependence
0.010 GeneticVariation BEFREE It has been recently suggested that 5-HTTLPR (LL/LS/SS) variants and rs25531 (A/G) polymorphism in the serotonin transporter gene (SLC6A4) may play a role in drug dependence. 23033208 2014
dbSNP: rs2020942
rs2020942
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0149931
Disease:
Migraine Disorders
0.010 GeneticVariation BEFREE It was found that the 5-HTT VNTR Stin2.12 allele or 12/12 genotype had an increased risk for migraine in the general population (Stin2.12 allele: OR, 95% CI: 1.34, 1.09-1.64, p=0.006; 12/12 genotype: OR, 95% CI: 1.55, 1.17-2.05, p=0.002), but there was no significant association between migraine and 5-HTTLPR or SNP rs2020942. 21450309 2011
dbSNP: rs7212502
rs7212502
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0392885
Disease:
High density lipoprotein measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs7212502
rs7212502
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0202236
Disease:
Triglycerides measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs7212502
rs7212502
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0428472
Disease:
Serum HDL cholesterol measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs11872020
rs11872020
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C1261502
Disease:
Finding of Mean Corpuscular Hemoglobin
0.700 GeneticVariation GWASCAT Leveraging Polygenic Functional Enrichment to Improve GWAS Power. 30595370 2019
dbSNP: rs2020942
rs2020942
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C1305855
Disease:
Body mass index
0.700 GeneticVariation GWASCAT Leveraging Polygenic Functional Enrichment to Improve GWAS Power. 30595370 2019
dbSNP: rs3813034
rs3813034
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0438696
Disease:
Suicidal
0.010 GeneticVariation BEFREE Likewise, CT exposed carriers of the major rs3813034-rs1042173 ATAT diplotype had an increased risk of suicidal behavior relative to the ATCG/CGCG diplotype carriers (0.40 vs 0.31). 23558235 2013
dbSNP: rs1042173
rs1042173
Entrez Id: 6532
Gene Symbol: SLC6A4
SLC6A4
CUI: C0438696
Disease:
Suicidal
0.010 GeneticVariation BEFREE Likewise, CT exposed carriers of the major rs3813034-rs1042173 ATAT diplotype had an increased risk of suicidal behavior relative to the ATCG/CGCG diplotype carriers (0.40 vs 0.31). 23558235 2013
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0040517
Disease:
Gilles de la Tourette syndrome
0.010 GeneticVariation BEFREE Likewise, the higher expressing LAC haplotype (5-HTTLPR/rs25531/rs25532) was more frequent in TD probands than in controls (P = 0.024; OR, 1.33) and also in the TD alone group versus the TD plus OCD group (P = 0.0013; OR, 2.14). 23630162 2013
dbSNP: rs25532
rs25532
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0040517
Disease:
Gilles de la Tourette syndrome
0.010 GeneticVariation BEFREE Likewise, the higher expressing LAC haplotype (5-HTTLPR/rs25531/rs25532) was more frequent in TD probands than in controls (P = 0.024; OR, 1.33) and also in the TD alone group versus the TD plus OCD group (P = 0.0013; OR, 2.14). 23630162 2013
dbSNP: rs25532
rs25532
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0028768
Disease:
Obsessive-Compulsive Disorder
0.030 GeneticVariation BEFREE Likewise, the higher expressing LAC haplotype (5-HTTLPR/rs25531/rs25532) was more frequent in TD probands than in controls (P = 0.024; OR, 1.33) and also in the TD alone group versus the TD plus OCD group (P = 0.0013; OR, 2.14). 23630162 2013
dbSNP: rs25531
rs25531
Entrez Id: 6532;105371720
Gene Symbol: SLC6A4;LOC105371720
SLC6A4;LOC105371720
CUI: C0020538
Disease:
Hypertensive disease
0.010 GeneticVariation BEFREE Logistic regression and linear models tested associations between triallelic (L'S', based on rs25531) 5HTTLPR genotypes and hypertension severity and mean systolic and diastolic blood pressure (SBP and DBP) collected during the Wave IV survey of the National Longitudinal Study of Adolescent to Adult Health (Add Health, N=11,815) in 2008-09 and during 2004-07 in 4196 Singaporeans. 28267464 2017