Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs17235409
rs17235409
0.090 GeneticVariation BEFREE NRAMP1 D543N and INT4 polymorphisms in susceptibility to pulmonary tuberculosis: A meta-analysis. 28648687

2017

dbSNP: rs17235409
rs17235409
0.090 GeneticVariation BEFREE In further stratified analyses by ethnicity and TB forms, significant increased risks were found in subgroups of Asians and in pulmonary TB (PTB) for all four polymorphisms, while an increased risk of extra-pulmonary TB (EPTB) was found for D543N polymorphism. 22326178

2012

dbSNP: rs17235409
rs17235409
0.090 GeneticVariation BEFREE The distribution of 3'-UTR and D543N polymorphisms in 223 TB patients (168 patients with pulmonary TB (PTB) and 55 patients with extrapulmonary TB (EPTB)) and 150 healthy donors was determined by PCR-restriction fragment length polymorphism (RFLP) method. 22609013

2012

dbSNP: rs17235409
rs17235409
0.090 GeneticVariation BEFREE NRAMP1 polymorphisms (3'UTR, D543N, INT4) were evaluated among 142 patients with culture-positive pulmonary tuberculosis and 144 ethnically matched healthy controls having latent M. tuberculosis infection. 21169917

2011

dbSNP: rs17235409
rs17235409
0.090 GeneticVariation BEFREE Using polymerase chain reaction and the restriction fragment-length polymorphism analyses, we investigated four previously reported SLC11A1 polymorphisms, variations in 5'(GT)n, INT4, D543N, and 3'UTR in 95 patients with pulmonary tuberculosis including 10 MDR-TB patients. 17950034

2008

dbSNP: rs17235409
rs17235409
0.090 GeneticVariation BEFREE No association of other polymorphisms (NRAMP1 D543N, TNF-alpha-308) and susceptibility to silicosis or PTB in Chinese miners was found. 17223386

2007

dbSNP: rs17235409
rs17235409
0.090 GeneticVariation BEFREE To explore the potential role of these genes in the susceptibility to pulmonary tuberculosis in a Mexican mestizo population, we evaluated the association of D543N and 3'-UTR polymorphisms in NRAMP1/SLC11 A1 and - 762 and A1513C polymorphisms in P2X(7) genes with the risk for tuberculosis. 17493019

2007

dbSNP: rs17235409
rs17235409
0.090 GeneticVariation BEFREE INT4-D543N-3'UTR haplotypes showed an association with pulmonary TB (P=0.03). 16461017

2006

dbSNP: rs17235409
rs17235409
0.090 GeneticVariation BEFREE To test this possibility, we examined NRAMP1 variants at the INT4 and D543N loci, as well as their association with severe forms of pulmonary tuberculosis, in 127 patients with active pulmonary tuberculosis and in 91 ethnically matched, healthy control subjects in areas of China where tuberculosis is endemic. 15825023

2005

dbSNP: rs5743708
rs5743708
0.080 GeneticVariation BEFREE (3) Stratified by sample type, TLR2 Arg753Gln polymorphism is associated with increased PTB risk, but not with EPTB. 30733958

2019

dbSNP: rs5743708
rs5743708
0.080 GeneticVariation BEFREE Genotyping was performed to detect -196 to -174 del polymorphism and G2258A SNP (Arg753Gln, rs5743708) in TLR2 gene and -T1237C (rs5743836) and G2848A (rs352140) SNP in TLR9 gene in patients with pulmonary TB and healthy controls. 29675696

2018

dbSNP: rs5743708
rs5743708
0.080 GeneticVariation BEFREE There was a significant association between the GA genotype (heterozygous mutant) of TLR2 Arg753Gln polymorphism and the risk of infection with pulmonary TB (p = 0.003, OR = 4.83) and TB peritonitis (p = 0.003, OR = 6.2). 28332241

2017

dbSNP: rs5743708
rs5743708
0.080 GeneticVariation BEFREE In TLR2, the frequencies of the CC genotype (OR = 2.262; 95% CI: 1.433-3.570) and C allele (OR = 1.566; 95% CI: 1.223-1.900) in single-nucleotide polymorphism (SNP) rs3804100 were significantly higher in the LTBI group than in the HC group, whereas the GA genotype of SNP rs5743708 was associated with PTB (OR = 6.087; 95% CI: 1.687-21.968). 25928077

2015

dbSNP: rs5743708
rs5743708
0.080 GeneticVariation BEFREE A meta-analysis was conducted to investigate the relationship between TLR2 G2</span>258A and T597C polymorphisms with PTB susceptibility. 24124467

2013

dbSNP: rs5743708
rs5743708
0.080 GeneticVariation BEFREE We also showed that the frequencies of the heterozygous Arg753Gln genotype and the Gln allele were significantly higher in patients with pulmonary TB alone and in patients with definitive pulmonary plus extrapulmonary TB than in children with LTBI. 21320563

2011

dbSNP: rs5743708
rs5743708
0.080 GeneticVariation BEFREE In the present study, we investigated whether variants in the TLR-1 1805T/G (Ile602Ser), TLR-2 2258G/A (Arg753Gln), TLR-4 896A/G (Asp299Gly), TLR-4 1196C/T (Thr399Ile), TLR-6 745C/T (Ser249Pro), TIRAP 975C/T (Ser180Leu) genes and TLR-9 promoter region polymorphisms at positions -1237C/T and -1486C/T are associated with susceptibility or resistance to pulmonary tuberculosis (PTB). 20797905

2010

dbSNP: rs5743708
rs5743708
0.080 GeneticVariation BEFREE The aim of this study was to investigate whether the functional genetic variations at position 1805 G/T in TLR1, 2258 A/G in TLR2, -857 C/T, and -863 A/C in tumor necrosis factor-α (TNF-α), as well as -819 C/T in interleukin-10 (IL-10) confer susceptibility to pulmonary tuberculosis (PTB). 20650298

2010

dbSNP: rs4986790
rs4986790
0.060 GeneticVariation BEFREE Furthermore, SNPs TLR9 rs352139 and TLR8 rs3764880 were associated with PTB in the late-onset (≥39-year-old) patient group (OR = 0.60, p = 0.0029 and OR = 0.70, p = 0.021, respectively) and SNPs TLR2 rs3804099, TLR4 rs4986790 and TLR4 rs1927906 in the early-onset (≤ 38-year-old) group (OR = 0.53, p = 0.0012; OR = 3.45, p = 0.013; OR = 2.31, p = 0.044, respectively). 30529560

2019

dbSNP: rs4986790
rs4986790
0.060 GeneticVariation BEFREE BACKGROUND Findings regarding the association of the single-nucleotide polymorphisms (SNPs) rs4986790 and rs4986791 in Toll-like receptor 4 and rs187084, rs574386, and rs352139 in Toll-like receptor 9 (TLR9) with pulmonary tuberculosis (PTB) susceptibility are inconsistent. 25889916

2015

dbSNP: rs4986790
rs4986790
0.060 GeneticVariation BEFREE Human Toll-like receptor 4 polymorphisms TLR4 Asp299Gly and Thr399Ile influence susceptibility and severity of pulmonary tuberculosis in the Asian Indian population. 20403143

2010

dbSNP: rs4986790
rs4986790
0.060 GeneticVariation BEFREE In the present study, we investigated whether variants in the TLR-1 1805T/G (Ile602Ser), TLR-2 2258G/A (Arg753Gln), TLR-4 896A/G (Asp299Gly), TLR-4 1196C/T (Thr399Ile), TLR-6 745C/T (Ser249Pro), TIRAP 975C/T (Ser180Leu) genes and TLR-9 promoter region polymorphisms at positions -1237C/T and -1486C/T are associated with susceptibility or resistance to pulmonary tuberculosis (PTB). 20797905

2010

dbSNP: rs4986790
rs4986790
0.060 GeneticVariation BEFREE No association between TLR4 Asp299Gly and pulmonary TB was found. 18008256

2007

dbSNP: rs4986790
rs4986790
0.060 GeneticVariation BEFREE To determine whether TLR4 Asp299Gly influences LPS responses or susceptibility to pulmonary TB in humans in a Gambian population sample. 15525557

2004

dbSNP: rs3804099
rs3804099
0.040 GeneticVariation BEFREE Polymorphisms rs3804099 (TLR2) and rs352139 (TLR9) may also be associated with PTB risk in the Moldavian population but their effect is less consistent across different studies. 30529560

2019

dbSNP: rs2476601
rs2476601
0.040 GeneticVariation BEFREE We found that the T allele of rs2476601 and the A allele of rs33996649within <i>PTPN22</i> gene, interaction between rs2476601 and T2DM were all associated with increased PTB risk. 29029456

2017